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add cnn model for malaria detection #1072

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Jul 20, 2023
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77 changes: 77 additions & 0 deletions examples/malaria_cnn/model/cnn.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,77 @@

from singa import layer
from singa import model


class CNN(model.Model):

def __init__(self, num_classes=10, num_channels=1):
super(CNN, self).__init__()
self.num_classes = num_classes
self.input_size = 128
self.dimension = 4
self.conv1 = layer.Conv2d(num_channels, 32, 3, padding=0, activation="RELU")
self.conv2 = layer.Conv2d(32, 64, 3, padding=0, activation="RELU")
self.conv3 = layer.Conv2d(64, 64, 3, padding=0, activation="RELU")
self.linear1 = layer.Linear(128)
self.linear2 = layer.Linear(num_classes)
self.pooling1 = layer.MaxPool2d(2, 2, padding=0)
self.pooling2 = layer.MaxPool2d(2, 2, padding=0)
self.pooling3 = layer.MaxPool2d(2, 2, padding=0)
self.relu = layer.ReLU()
self.flatten = layer.Flatten()
self.softmax_cross_entropy = layer.SoftMaxCrossEntropy()
self.sigmoid = layer

def forward(self, x):
y = self.conv1(x)
y = self.pooling1(y)
y = self.conv2(y)
y = self.pooling2(y)
y = self.conv3(y)
y = self.pooling3(y)
y = self.flatten(y)
y = self.linear1(y)
y = self.relu(y)
y = self.linear2(y)
return y

def train_one_batch(self, x, y, dist_option, spars):
out = self.forward(x)
loss = self.softmax_cross_entropy(out, y)

if dist_option == 'plain':
self.optimizer(loss)
elif dist_option == 'half':
self.optimizer.backward_and_update_half(loss)
elif dist_option == 'partialUpdate':
self.optimizer.backward_and_partial_update(loss)
elif dist_option == 'sparseTopK':
self.optimizer.backward_and_sparse_update(loss,
topK=True,
spars=spars)
elif dist_option == 'sparseThreshold':
self.optimizer.backward_and_sparse_update(loss,
topK=False,
spars=spars)
return out, loss

def set_optimizer(self, optimizer):
self.optimizer = optimizer


def create_model(**kwargs):
"""Constructs a CNN model.

Args:
pretrained (bool): If True, returns a pre-trained model.

Returns:
The created CNN model.
"""
model = CNN(**kwargs)

return model


__all__ = ['CNN', 'create_model']
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