Refactor to use Pytorch for training models #881
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| name: Tests and Linting | |
| on: | |
| pull_request: | |
| push: | |
| branches: [master] | |
| jobs: | |
| Linting: | |
| if: github.event_name == 'pull_request' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| # requites to grab the history of the PR | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v3 | |
| - uses: pre-commit/[email protected] | |
| with: | |
| extra_args: --color=always --from-ref ${{ github.event.pull_request.base.sha }} --to-ref ${{ github.event.pull_request.head.sha }} | |
| Pytest: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Cache downloaded resources | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.data/ | |
| key: resources | |
| - name: Set up Java | |
| uses: actions/setup-java@v2 | |
| with: | |
| distribution: "temurin" # See 'Supported distributions' for available options | |
| java-version: "8" | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| architecture: x64 | |
| - name: Install dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install -e '.[dev,setup]' | |
| - name: Test with Pytest on Python ${{ matrix.python-version }} | |
| env: | |
| UMLS_API_KEY: ${{ secrets.UMLS_API_KEY }} | |
| run: python -m pytest --cov edsnlp --cov-report xml --ignore tests/test_docs.py | |
| if: matrix.python-version != '3.9' | |
| - name: Test with Pytest on Python ${{ matrix.python-version }} | |
| env: | |
| UMLS_API_KEY: ${{ secrets.UMLS_API_KEY }} | |
| run: python -m pytest --cov edsnlp --cov-report xml | |
| if: matrix.python-version == '3.9' | |
| - name: Upload coverage | |
| uses: codecov/codecov-action@v2 | |
| if: matrix.python-version == '3.9' | |
| Documentation: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.9" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install '.[dev]' | |
| - name: Build documentation | |
| run: | | |
| mkdocs build --clean | |
| Installation: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install library | |
| run: | | |
| pip install . |