Skip to content

Code for processing mammalian transposon calling card data

License

Notifications You must be signed in to change notification settings

arnavm/calling_cards

Repository files navigation

Prerequisites

The scripts in this folder require python3, preferrably a relatively recent version (e.g. ≥ 3.5). In addition, you will need to install the following modules:

  • pysam
  • numpy
  • pandas
  • twobitreader
  • pybedtools
  • scipy
  • statsmodels
  • astropy

The easiest way to install them is:

  • If python3 is the default: pip install pysam numpy pandas twobitreader pybedtools scipy statsmodels astropy
  • Otherwise: pip3 install pysam numpy pandas twobitreader pybedtools scipy statsmodels astropy

To figure out which version of python is installed by default:

  • python -V

About

Code for processing mammalian transposon calling card data

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published