v1.1 Data packages

The data packages are available in the binaries above with the following semantic:

<project name>.data.<date_retrieved: yyyy.mm.dd>_<version>

Data was downloaded from TCGA at different dates.

Cancer type	TCGA code	📅 downloaded
Breast Invasive Carcinoma	BRCA	September 13, 2018
Skin Melanoma	SKCM	September 11, 2018
Prostate Adenocarcinoma	PRAD	October 11, 2018
Kidney Renal Clear Cell Carcinoma	KIRC	October 17, 2018
Lung Adenocarcinoma	LUAD	October 17, 2018
Uterine Corpus Endometrial Carcinoma	UCEC	October 17, 2018
Brain Lower Grade Glioma	LGG	October 17, 2018
Ovarian Serous Cystadenocarcinoma	OV	November 30, 2018

Breast Cancer (September 13, 2018)

brca.2018.09.13

continues to remove redundant functions

Skin Melanoma (June 20, 2018)

A newer version is available see releases

• Adds more information on biospecimen
• Creates a MultiExperiment Object

Skin Melanoma (November 22, 2017)

A newer version is available see releases

Gene expression levels (FPKM) ready-to-use.

Retrieved at November 22, 2017

Prostate Cancer (July 21, 2017)

A newer version is available see releases

Gene expression levels (FPKM) ready-to-use.

Retrieved at July 21, 2017

Breast Cancer (December 15, 2016)

A newer version is available see releases

Gene expression levels (FPKM) ready-to-use.

Retrieved at December 15, 2016