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generate molecules from smiles and save to .xyz, .cif, or .vasp (POSCAR) files to use in calculations

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SMILESBOX

Information:

A way of taking a SMILES string and turning it into a simple simulation cell

Installation:

pip install .

Usage (CLI):

smilesbox-generate -s "CC" --box --dimensions 10 10 10 --save

Output:
SMILES:

 CC

FORMULA:

 C2H6

CELL:

[[10.  0.  0.]
 [ 0. 10.  0.]
 [ 0.  0. 20.]]

                                                  
                                                  
                                                  
                                                  
                 H                                
                                                  
                                                  
                  |          H                    
                  |                               
        H   ______|         /                     
                 _/\___   _/                      
                /      \_/______  H               
               /         |                        
             H           |                        
                         |                        
                                                  
                         H                        
                                        

ethane molecule

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generate molecules from smiles and save to .xyz, .cif, or .vasp (POSCAR) files to use in calculations

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