Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Update plastid meta.yaml to restrict numpy version under 1.24 #38652

Merged
merged 11 commits into from
Jan 6, 2023
Merged

Update plastid meta.yaml to restrict numpy version under 1.24 #38652

Changes from all commits
Commits
Show all changes
11 commits
Select commit Hold shift + click to select a range
e1048b7
Update plastid meta.yaml to restrict numpy version under 1.24
mnapolitano89 Jan 4, 2023
47f802b
Update meta.yaml version number to 1
mnapolitano89 Jan 4, 2023
8ed7689
Merge branch 'master' into patch-plastid-recipe
mnapolitano89 Jan 4, 2023
71ee036
try with pin_compatible in run max pinned to 1.23 as well.
mnapolitano89 Jan 4, 2023
77fab5c
Update meta.yaml
mnapolitano89 Jan 5, 2023
ca343e9
remove numpy x.x pin
mnapolitano89 Jan 5, 2023
9712f21
Update meta.yaml
mnapolitano89 Jan 5, 2023
88f69e9
Update meta.yaml
mnapolitano89 Jan 5, 2023
c56e0e2
Update meta.yaml
mnapolitano89 Jan 5, 2023
69361a5
Update meta.yaml
mnapolitano89 Jan 5, 2023
a88bae0
Merge branch 'master' into patch-plastid-recipe
mnapolitano89 Jan 5, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
11 changes: 7 additions & 4 deletions recipes/plastid/meta.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ source:
build:
# We're not rebuilding old biopython versions on conda-forge for this
skip: true # [py > 39]
number: 0
number: 1

extra:
skip-lints:
Expand All @@ -25,7 +25,7 @@ requirements:
- python
- cython >=0.22.0
- setuptools
- numpy >=1.9.4
- numpy >=1.9.4,<=1.23.5 # numpy 1.24 removes np.TYPE (reported https://github.com/joshuagryphon/plastid/issues/55)
- pysam >=0.8.4
- termcolor
- scipy >=0.15.1
Expand All @@ -34,9 +34,12 @@ requirements:
- biopython >=1.64,<1.78 # 1.78 removed Bio.Alphabet (reported https://github.com/joshuagryphon/plastid/issues/45)
- twobitreader >=3.0.0
- zlib
- openssl
- htslib

run:
- python
- {{ pin_compatible('numpy') }}
- numpy <=1.23.5
- {{ pin_compatible('pysam', max_pin='x.x.x') }}
- setuptools
- cython >=0.22.0
Expand All @@ -49,7 +52,7 @@ requirements:
- zlib
- bowtie
- fastx_toolkit

- htslib
test:
imports:
- plastid
Expand Down