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Add pykofamsearch #51537

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Oct 22, 2024
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49 changes: 49 additions & 0 deletions recipes/pykofamsearch/meta.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,49 @@
{% set name = "pykofamsearch" %}
{% set version = "2024.10.20" %}

package:
name: {{ name|lower }}
version: {{ version }}

source:
url: https://pypi.org/packages/source/{{ name[0] }}/{{ name }}/pykofamsearch-{{ version }}.tar.gz
sha256: f9455f343095327bab331a35010867d5d60f67b13bd5c2344d012e6801e48fad

build:
script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation --no-cache-dir
number: 0
noarch: python
entry_points:
- pykofamsearch=pykofamsearch.pykofamsearch:main
- reformat_enzymes=pykofamsearch.reformat_enzymes:main
- reformat_pykofamsearch=pykofamsearch.reformat_pykofamsearch:main
- serialize_kofam_models=pykofamsearch.serialize_kofam_models:main
- subset_serialized_models=pykofamsearch.subset_serialized_models:main
run_exports:
- {{ pin_subpackage("pykofamsearch", max_pin=None) }}

requirements:
host:
- python
- pip
run:
- python
- pyhmmer >=0.10.12
- pandas >=2
- tqdm >=4

test:
commands:
- pykofamsearch --help
- reformat_enzymes --help
- reformat_pykofamsearch --help
- serialize_kofam_models --help
- subset_serialized_models --help

about:
home: "https://github.com/jolespin/pykofamsearch"
summary: "Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer."
license: MIT
license_family: MIT
license_file: LICENSE
dev_url: "https://github.com/jolespin/pykofamsearch"