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Create FC-Virus #51578

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Create FC-Virus #51578

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33 changes: 33 additions & 0 deletions recipes/FC-Virus/meta.yaml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,33 @@
package:
name: FC-Virus
version: "1.0.0"

source:
git_url: https://github.com/qdu-bioinfo/FC-Virus
git_tag: main
sha256: a5c91ea315dc7b64b75986128d97c08522aae332cb640fd2c115cc379b4adc51
Comment on lines +5 to +8
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⚠️ Potential issue

Use version tag instead of main branch for reproducibility.

Using git_tag: main is problematic as it:

  1. Makes builds non-reproducible since main branch content can change
  2. Violates conda packaging best practices
  3. Doesn't match the declared version 1.0.0

Consider using a specific version tag (e.g., v1.0.0) that corresponds to the package version.

 source:
   git_url: https://github.com/qdu-bioinfo/FC-Virus
-  git_tag: main
+  git_tag: v1.0.0
   sha256: a5c91ea315dc7b64b75986128d97c08522aae332cb640fd2c115cc379b4adc51

Committable suggestion was skipped due to low confidence.


build:
number: 0
skip: true
Comment on lines +10 to +12
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⚠️ Potential issue

Remove skip: true to enable package building.

The skip: true setting will prevent the package from being built. This contradicts the PR's purpose of creating a new package.

 build:
   number: 0
-  skip: true
📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
build:
number: 0
skip: true
build:
number: 0


requirements:
build:
- gcc
- gxx_linux-64
- make
- boost
run:
- gcc
- boost
Comment on lines +14 to +22
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⚠️ Potential issue

Update dependency specifications for better compatibility.

Several improvements needed in the requirements section:

  1. Add compiler pins for gcc/gxx
  2. Specify boost version in build requirements
  3. Replace gcc run dependency with libgcc-ng
  4. Add platform-specific build configuration
 requirements:
   build:
-    - gcc
-    - gxx_linux-64
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
     - make
-    - boost
+    - boost >=1.70.0
   run:
-    - gcc
+    - libgcc-ng  # [linux]
     - boost

Also add platform skip configuration:

build:
  number: 0
  skip: true  # [win]


about:
home: https://github.com/qdu-bioinfo/FC-Virus
license: MIT
summary: "Accurate Assembly of Full-length Consensus for Viral Quasispecies"
run_exports:
- boost >=1.70.0
Comment on lines +24 to +29
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⚠️ Potential issue

Restructure metadata and add license file specification.

  1. Move run_exports section under build
  2. Add license_file field to verify MIT license
 about:
   home: https://github.com/qdu-bioinfo/FC-Virus
   license: MIT
+  license_file: LICENSE
   summary: "Accurate Assembly of Full-length Consensus for Viral Quasispecies"
-  run_exports:
-    - boost >=1.70.0

 build:
   number: 0
+  run_exports:
+    - boost >=1.70.0

Committable suggestion was skipped due to low confidence.


test:
commands:
- ./bin/FC-Virus --help
Comment on lines +31 to +33
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⚠️ Potential issue

Improve test configuration for better validation.

Current test configuration has several issues:

  1. Using relative path ./bin/ won't work in conda environment
  2. Missing version check
  3. No test files or requirements specified
 test:
   commands:
-    - ./bin/FC-Virus --help
+    - FC-Virus --help
+    - FC-Virus --version | grep "1.0.0"
+  requires:
+    - boost >=1.70.0

Committable suggestion was skipped due to low confidence.

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