Correctly handle empty CSV files #48

	name: CI

	on: [push]

	env:
	CMDSTAN_VERSION: "2.34.1"

	jobs:
	tests:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.11"]
	steps:
	- uses: actions/checkout@v4
	- name: Cache CmdStan
	id: cache-cmdstan
	uses: actions/cache@v4
	with:
	path: "~/.cmdstan"
	key: cmdstan-${{ env.CMDSTAN_VERSION }}-${{ runner.os }}
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	cache: 'pip'
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install .[test]
	- name: Install CmdStan
	run: \|
	import cmdstanpy
	cmdstanpy.install_cmdstan(version="${{ env.CMDSTAN_VERSION }}")
	shell: python
	- name: Test with pytest
	run: python -m pytest
	workflow:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.11"]
	steps:
	- uses: actions/checkout@v4
	- name: Cache CmdStan
	id: cache-cmdstan
	uses: actions/cache@v4
	with:
	path: "~/.cmdstan"
	key: cmdstan-${{ env.CMDSTAN_VERSION }}-${{ runner.os }}
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	cache: 'pip'
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install .[test]
	- name: Install CmdStan
	run: \|
	import cmdstanpy
	cmdstanpy.install_cmdstan(version="${{ env.CMDSTAN_VERSION }}")
	shell: python
	- name: Run snakemake on a reduced workflow
	run: python -m snakemake --cores 1 --configfile tests/workflow/test_config.yaml

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