Update plot code to more closely reproduce original paper #749
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: TestSuite | |
| on: [push, pull_request] | |
| jobs: | |
| get_python_versions: | |
| name: "Determine Python versions" | |
| runs-on: ubuntu-latest | |
| outputs: | |
| min-python: ${{ steps.nep29.outputs.min-python }} | |
| max-python: ${{ steps.nep29.outputs.max-python }} | |
| steps: | |
| - name: "calculate versions according to NEP29" | |
| id: nep29 | |
| uses: mstimberg/[email protected] | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| pre-commit: | |
| name: Run linters with pre-commit | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| cache: 'pip' | |
| cache-dependency-path: .devcontainer/dev-requirements.txt | |
| - name: Install deps | |
| run: pip3 install -r .devcontainer/dev-requirements.txt | |
| - name: Run pre-commit hooks | |
| run: pre-commit run --all-files --show-diff-on-failure | |
| testing: | |
| needs: [get_python_versions, pre-commit] | |
| name: "Python ${{ matrix.python-version }} on ${{ matrix.os }} (standalone: ${{ matrix.standalone }}, 32bit: ${{ matrix.float_dtype_32 }})" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-20.04, windows-2019, macOS-11] | |
| standalone: [false, true] | |
| float_dtype_32: [false, true] | |
| python-version: ["${{ needs.get_python_versions.outputs.max-python }}"] | |
| include: | |
| - os: ubuntu-20.04 | |
| standalone: false | |
| python-version: "${{ needs.get_python_versions.outputs.min-python }}" | |
| float_dtype_32: false | |
| - os: ubuntu-20.04 | |
| standalone: true | |
| python-version: "${{ needs.get_python_versions.outputs.min-python }}" | |
| float_dtype_32: false | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Conda and Python | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| channels: conda-forge,defaults | |
| channel-priority: true | |
| activate-environment: 'test_env' | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Brian2 and dependencies | |
| run: | | |
| conda install -n test_env --quiet --yes -c conda-forge pip pytest cython sympy future pyparsing numpy jinja2 six scipy sphinx gsl coverage | |
| pip install . | |
| - name: Run Tests | |
| run: | | |
| cd $GITHUB_WORKSPACE/.. # move out of the workspace to avoid direct import | |
| coverage run --rcfile=$GITHUB_WORKSPACE/.coveragerc $GITHUB_WORKSPACE/$SCRIPT_NAME | |
| env: | |
| SCRIPT_NAME: dev/continuous-integration/run_test_suite.py | |
| SPHINX_DIR: ${{ github.workspace }}/docs_sphinx | |
| AGENT_OS: ${{runner.os}} | |
| STANDALONE: ${{ matrix.standalone }} | |
| FLOAT_DTYPE_32: ${{ matrix.float_dtype_32 }} | |
| - name: Upload coverage data to coveralls | |
| if: ${{ startsWith(matrix.os, 'ubuntu-') && matrix.python-version == needs.get_python_versions.outputs.max-python }} | |
| run: | | |
| cp $GITHUB_WORKSPACE/../.coverage . | |
| conda install --quiet --yes coveralls | |
| coveralls --service=github --rcfile=$GITHUB_WORKSPACE/.coveragerc | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: ${{ github.job }} | |
| COVERALLS_PARALLEL: true | |
| coveralls: | |
| name: Indicate completion to coveralls.io | |
| needs: testing | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| steps: | |
| - name: Finished | |
| run: | | |
| pip3 install --upgrade coveralls | |
| coveralls --finish | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |