Fix catch_logs behaviour for 3rd-party modules #86

Workflow file for this run

.github/workflows/publish.yml at 0583e5e

	name: Build and publish
	on: [push, pull_request]

	jobs:
	get_python_versions:
	name: "Determine Python versions"
	runs-on: ubuntu-latest
	outputs:
	min-python: ${{ steps.nep29.outputs.min-python }}
	max-python: ${{ steps.nep29.outputs.max-python }}
	steps:
	- name: "calculate versions according to NEP29"
	id: nep29
	uses: mstimberg/[email protected]
	with:
	token: ${{ secrets.GITHUB_TOKEN }}

	build:
	needs: [get_python_versions]
	name: Build 🎡 on ${{ matrix.os }}
	runs-on: ${{ matrix.os }}
	strategy:
	fail-fast: false
	matrix:
	os: [ windows-latest, macOS-12, macOS-14 ]
	steps:
	- uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- name: Set up Python 3.x
	uses: actions/setup-python@v5
	with:
	python-version: '3.x'
	- name: Install platformdirs
	run: python -m pip install platformdirs
	- name: Display cibuildwheel cache dir
	id: cibuildwheel-cache
	run: \|
	from platformdirs import user_cache_path
	import os

	with open(os.getenv('GITHUB_OUTPUT'), 'w') as f:
	f.write(f"dir={str(user_cache_path(appname='cibuildwheel', appauthor='pypa'))}")
	shell: python
	- name: Cache cibuildwheel tools
	uses: actions/cache@v4
	with:
	path: ${{ steps.cibuildwheel-cache.outputs.dir }}
	key: ${{ runner.os }}-cibuildwheel
	- name: Build wheels
	uses: pypa/[email protected]
	env:
	CIBW_PROJECT_REQUIRES_PYTHON: ">=${{ needs.get_python_versions.outputs.min-python }}"
	CIBW_ARCHS: auto64
	# Do not build for PyPy
	CIBW_SKIP: 'pp*'
	CIBW_TEST_COMMAND: python {project}/dev/continuous-integration/run_simple_test.py
	CIBW_TEST_REQUIRES: pytest
	with:
	output-dir: dist
	- name: store distribution 📦
	uses: actions/upload-artifact@v4
	with:
	name: packages-${{ matrix.os }}
	path: dist

	build-linux:
	needs: [get_python_versions]
	name: Build ${{ matrix.arch }} 🎡 and source 📦 on Linux
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	arch: [ auto64, aarch64 ]
	steps:
	- uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- name: Set up Python 3.x
	uses: actions/setup-python@v5
	with:
	python-version: '3.x'
	- name: Build source tarball
	run: \|
	python -m pip install --upgrade pip build
	python -m pip install "cython>=0.29" oldest-supported-numpy "setuptools>=61" "setuptools_scm[toml]>=6.2"
	python -m build --sdist --config-setting=--formats=gztar --config-setting=--with-cython --config-setting=--fail-on-error
	if: ${{ matrix.arch == 'auto64' }}
	- name: Set up QEMU
	uses: docker/setup-qemu-action@v3
	with:
	platforms: all
	- name: Install platformdirs
	run: python -m pip install platformdirs
	- name: Display cibuildwheel cache dir
	id: cibuildwheel-cache
	run: \|
	from platformdirs import user_cache_path
	import os

	with open(os.getenv('GITHUB_OUTPUT'), 'w') as f:
	f.write(f"dir={str(user_cache_path(appname='cibuildwheel', appauthor='pypa'))}")
	shell: python
	- name: Cache cibuildwheel tools
	uses: actions/cache@v4
	with:
	path: ${{ steps.cibuildwheel-cache.outputs.dir }}
	key: ${{ runner.os }}-${{ matrix.arch }}-cibuildwheel
	- name: Build wheels
	uses: pypa/[email protected]
	env:
	CIBW_PROJECT_REQUIRES_PYTHON: ">=${{ needs.get_python_versions.outputs.min-python }}"
	CIBW_ARCHS_LINUX: ${{ matrix.arch }}
	CIBW_MANYLINUX_X86_64_IMAGE: manylinux2014
	CIBW_SKIP: 'pp* *-musllinux_aarch64'
	CIBW_TEST_COMMAND: python {project}/dev/continuous-integration/run_simple_test.py
	CIBW_TEST_REQUIRES: pytest
	with:
	output-dir: dist
	- name: store distribution 📦
	uses: actions/upload-artifact@v4
	with:
	name: packages-linux-${{ matrix.arch }}
	path: dist

	deploy_dev:
	name: Publish development 📦 to TestPyPI
	runs-on: ubuntu-latest
	if: github.repository == 'brian-team/brian2' && github.ref == 'refs/heads/master'
	environment: development_release
	permissions:
	id-token: write # IMPORTANT: mandatory for trusted publishing
	needs:
	- build
	- build-linux
	steps:
	- name: load distribution 📦
	uses: actions/download-artifact@v4
	with:
	pattern: packages-*
	merge-multiple: true
	path: dist/
	- name: Publish distribution 📦 to Test PyPI
	uses: pypa/gh-action-pypi-publish@release/v1
	with:
	repository-url: https://test.pypi.org/legacy/

	deploy:
	name: Publish release 📦 to PyPI
	runs-on: ubuntu-latest
	if: github.repository == 'brian-team/brian2' && startsWith(github.ref, 'refs/tags')
	environment: release
	permissions:
	id-token: write # IMPORTANT: mandatory for trusted publishing
	needs:
	- build
	- build-linux
	steps:
	- name: load distribution 📦
	uses: actions/download-artifact@v4
	with:
	pattern: packages-*
	merge-multiple: true
	path: dist/
	- name: Publish distribution release 📦 to PyPI
	uses: pypa/gh-action-pypi-publish@release/v1

	build-docker:
	name: Build docker image
	runs-on: ubuntu-latest
	needs: build-linux
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4
	# https://github.com/actions/checkout/
	- name: Docker meta
	id: meta
	uses: docker/metadata-action@v5
	# https://github.com/docker/metadata-action
	with:
	images: \|
	briansimulator/brian
	flavor: latest=true
	tags: \|
	# type=semver,pattern={{raw}}
	type=ref,event=tag
	labels: \|
	org.opencontainers.image.title="Brian Docker Image"
	org.opencontainers.image.description="Docker image for Brian - a free, open source simulator for spiking neural networks"
	org.opencontainers.image.url=https://hub.docker.com/r/briansimulator/brian
	org.opencontainers.image.source=https://github.com/brian-team/brian2
	- name: Set up QEMU
	uses: docker/setup-qemu-action@v3
	# https://github.com/docker/setup-qemu-action
	with:
	platforms: 'amd64,arm64'
	- name: Set up Docker Buildx
	uses: docker/setup-buildx-action@v3
	# https://github.com/docker/setup-buildx-action
	- name: Login to DockerHub
	if: ${{ github.repository == 'brian-team/brian2' && github.actor != 'dependabot[bot]'}}
	uses: docker/login-action@v3
	# https://github.com/docker/login-action
	with:
	username: ${{ secrets.DOCKERHUB_USERNAME }}
	password: ${{ secrets.DOCKERHUB_TOKEN }}
	- name: load Linux x86 distribution 📦
	uses: actions/download-artifact@v4
	with:
	pattern: packages-linux-*
	merge-multiple: true
	path: packages
	- run: \|
	mkdir dist
	cp packages/Brian2cp312-manylinux_x86_64.whl dist
	cp packages/Brian2cp312-manylinux_aarch64.whl dist
	- name: Build (and potentially push) the Docker image
	uses: docker/build-push-action@v5
	# https://github.com/docker/build-push-action
	with:
	context: .
	file: docker/Dockerfile
	build-args: \|
	'BASE_IMAGE_TAG=3.12-bookworm'
	platforms: 'amd64,arm64'
	push: ${{ github.repository == 'brian-team/brian2' && startsWith(github.ref, 'refs/tags') && github.actor != 'dependabot[bot]'}}
	tags: ${{ steps.meta.outputs.tags }}
	labels: ${{ steps.meta.outputs.labels }}
	- name: Push docker image to dev repository
	if: ${{ github.repository == 'brian-team/brian2' && github.event_name == 'push' && !startsWith(github.ref, 'refs/tags') && github.actor != 'dependabot[bot]'}}
	uses: docker/build-push-action@v5
	with:
	context: .
	file: docker/Dockerfile
	build-args: \|
	'BASE_IMAGE_TAG=3.12-bookworm'
	platforms: 'amd64,arm64'
	push: true
	tags: briansimulator/brian-dev:dev-${{ github.ref_name }}
	labels: ${{ steps.meta.outputs.labels }}

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Fix catch_logs behaviour for 3rd-party modules #86

Workflow file

Fix catch_logs behaviour for 3rd-party modules #86

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Workflow file for this run