Test against latest dependencies #205
Workflow file for this run
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| name: Test against latest dependencies | |
| on: | |
| schedule: | |
| - cron: '25 5 * * SUN' | |
| workflow_dispatch: | |
| jobs: | |
| get_python_versions: | |
| name: "Determine Python versions" | |
| runs-on: ubuntu-latest | |
| outputs: | |
| min-python: ${{ steps.nep29.outputs.min-python }} | |
| max-python: ${{ steps.nep29.outputs.max-python }} | |
| steps: | |
| - name: "calculate versions according to NEP29" | |
| id: nep29 | |
| uses: mstimberg/[email protected] | |
| with: | |
| include-release-candidates: true | |
| include-beta-releases: true | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| testing: | |
| needs: [get_python_versions] | |
| name: "Python ${{ matrix.python-version }} on ${{ matrix.os.image }} (standalone: ${{ matrix.standalone }}, 32bit: ${{ matrix.float_dtype_32 }})" | |
| runs-on: ${{ matrix.os.image }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [{image: ubuntu-latest, triplet: x64-linux}, | |
| {image: windows-latest, triplet: x64-windows}, | |
| {image: macOS-12, triplet: x64-osx}, | |
| {image: macOS-14, triplet: arm64-osx}] | |
| standalone: [false, true] | |
| float_dtype_32: [false, true] | |
| python-version: ["${{ needs.get_python_versions.outputs.max-python }}"] | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install GSL | |
| uses: johnwason/vcpkg-action@v6 | |
| id: vcpkg | |
| with: | |
| pkgs: gsl | |
| triplet: ${{ matrix.os.triplet }} | |
| cache-key: gsl-${{ matrix.os.triplet }} | |
| revision: master | |
| token: ${{ github.token }} | |
| - name: Set GSL preference for vcpkg | |
| shell: bash | |
| run: | | |
| mkdir ~/.brian/ | |
| # Replaces backslashes with forward slashes | |
| echo "GSL.directory=\"${{ github.workspace }}\\vcpkg\\installed\${{ matrix.os.triplet }}\\include"\" | tr '\\' '/' > ~/.brian/user_preferences | |
| cat ~/.brian/user_preferences | |
| - name: Install Python | |
| id: python | |
| uses: actions/setup-python@v5 | |
| with: | |
| cache: 'pip' | |
| python-version: ${{ matrix.python-version }} | |
| allow-prereleases: true | |
| - name: Install scipy build dependencies (Linux) | |
| run: sudo apt install -y gcc g++ gfortran libopenblas-dev liblapack-dev pkg-config python3-pip python3-dev | |
| if: matrix.os.image == 'ubuntu-latest' | |
| - name: Install scipy build dependencies (mac OS) | |
| run: | | |
| sudo ln -s $(which gfortran-13) /usr/local/bin/gfortran | |
| brew install openblas pkg-config | |
| # Export PKG_CONFIG_PATH to GitHub Actions environment | |
| echo "export PKG_CONFIG_PATH=/opt/homebrew/opt/openblas/lib/pkgconfig" >> $GITHUB_ENV | |
| if: matrix.os.image == 'macOS-12' || matrix.os.image == 'macOS-14' | |
| - name: Install dependencies | |
| run: | | |
| ${{ steps.python.outputs.python-path }} -m pip install --upgrade pip setuptools | |
| ${{ steps.python.outputs.python-path }} -m pip install --pre -i https://pypi.anaconda.org/scientific-python-nightly-wheels/simple --extra-index-url https://pypi.org/simple numpy scipy | |
| ${{ steps.python.outputs.python-path }} -m pip install mpmath # install stable version | |
| ${{ steps.python.outputs.python-path }} -m pip install --pre pytest cython sympy pyparsing jinja2 sphinx | |
| - name: Install Brian2 | |
| run: | | |
| cp numpy2.pyproject.toml pyproject.toml | |
| ${{ steps.python.outputs.python-path }} -m pip install --pre -i https://pypi.anaconda.org/scientific-python-nightly-wheels/simple --extra-index-url https://pypi.org/simple . | |
| - name: Run Tests | |
| run: | | |
| cd ${{ github.workspace }}/.. # move out of the workspace to avoid direct import | |
| ${{ steps.python.outputs.python-path }} -Wd ${{ github.workspace }}/dev/continuous-integration/run_test_suite.py | |
| env: | |
| AGENT_OS: ${{runner.os}} | |
| STANDALONE: ${{ matrix.standalone }} | |
| FLOAT_DTYPE_32: ${{ matrix.float_dtype_32 }} | |
| DO_NOT_RESET_PREFERENCES: true # Make sure that GSL setting is used | |
| test-deprecations: | |
| needs: [ get_python_versions ] | |
| name: "Python ${{ matrix.python-version }} check for deprecation warnings on (standalone: ${{ matrix.standalone }}" | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| standalone: [ false, true ] | |
| python-version: [ "${{ needs.get_python_versions.outputs.max-python }}" ] | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install GSL | |
| uses: johnwason/vcpkg-action@v6 | |
| id: vcpkg | |
| with: | |
| pkgs: gsl | |
| triplet: x64-linux | |
| cache-key: gsl-x64-linux | |
| revision: master | |
| token: ${{ github.token }} | |
| - name: Install Python | |
| id: python | |
| uses: actions/setup-python@v5 | |
| with: | |
| cache: 'pip' | |
| python-version: ${{ matrix.python-version }} | |
| allow-prereleases: true | |
| - name: Install dependencies | |
| run: | | |
| ${{ steps.python.outputs.python-path }} -m pip install --upgrade pip setuptools | |
| ${{ steps.python.outputs.python-path }} -m pip install --pre -i https://pypi.anaconda.org/scientific-python-nightly-wheels/simple numpy scipy | |
| ${{ steps.python.outputs.python-path }} -m pip install --pre pytest cython sympy pyparsing jinja2 sphinx | |
| - name: Install Brian2 | |
| run: ${{ steps.python.outputs.python-path }} -m pip install --pre -i https://pypi.anaconda.org/scientific-python-nightly-wheels/simple --extra-index-url https://pypi.org/simple . | |
| - name: Determine Cython cache dir | |
| id: cython-cache | |
| run: | | |
| CACHE_DIR=$(python -c 'import os; from Cython.Utils import get_cython_cache_dir; print(os.path.join(get_cython_cache_dir(), "brian_extensions"))') | |
| echo "Cython cache dir: $CACHE_DIR" | |
| echo "cachedir=$CACHE_DIR" >> "$GITHUB_OUTPUT" | |
| - name: restore Cython cache | |
| uses: actions/cache@v4 | |
| if: ${{ ! matrix.standalone }} | |
| with: | |
| key: cython-extensions-latest-ubuntu-latest-${{ matrix.python-version }}-32bit-False | |
| path: ${{ steps.cython-cache.outputs.cachedir }} | |
| - name: Run Tests | |
| run: | | |
| cd ${{ github.workspace }}/.. # move out of the workspace to avoid direct import | |
| ${{ steps.python.outputs.python-path }} -Wd ${{ github.workspace }}/dev/continuous-integration/run_test_suite.py || echo "Tests failed (but not marked as failed on GA)" | |
| env: | |
| DEPRECATION_ERROR: true | |
| AGENT_OS: linux | |
| STANDALONE: ${{ matrix.standalone }} |