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Support unicode identifiers
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Fixes #1091
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mstimberg committed Apr 23, 2024
1 parent 222a47b commit bfb2aad
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Showing 5 changed files with 59 additions and 22 deletions.
8 changes: 4 additions & 4 deletions brian2/equations/equations.py
Original file line number Diff line number Diff line change
Expand Up @@ -20,6 +20,7 @@
Suppress,
Word,
ZeroOrMore,
pyparsing_unicode,
restOfLine,
)

Expand Down Expand Up @@ -73,7 +74,7 @@
# Note that the check_identifiers function later performs more checks, e.g.
# names starting with underscore should only be used internally
IDENTIFIER = Word(
string.ascii_letters + "_", string.ascii_letters + string.digits + "_"
pyparsing_unicode.alphas + "_", pyparsing_unicode.alphanums + "_"
).setResultsName("identifier")

# very broad definition here, expression will be analysed by sympy anyway
Expand Down Expand Up @@ -139,10 +140,9 @@ def check_identifier_basic(identifier):
Check an identifier (usually resulting from an equation string provided by
the user) for conformity with the rules. The rules are:
1. Only ASCII characters
2. Starts with a character, then mix of alphanumerical characters and
1. Starts with a character, then mix of alphanumerical characters and
underscore
3. Is not a reserved keyword of Python
2. Is not a reserved keyword of Python
Parameters
----------
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8 changes: 1 addition & 7 deletions brian2/groups/neurongroup.py
Original file line number Diff line number Diff line change
Expand Up @@ -3,12 +3,10 @@
"""

import numbers
import string
from collections.abc import MutableMapping, Sequence

import numpy as np
import sympy
from pyparsing import Word

from brian2.codegen.translation import analyse_identifiers
from brian2.core.preferences import prefs
Expand All @@ -21,6 +19,7 @@
)
from brian2.equations.equations import (
DIFFERENTIAL_EQUATION,
IDENTIFIER,
PARAMETER,
SUBEXPRESSION,
Equations,
Expand Down Expand Up @@ -51,11 +50,6 @@
logger = get_logger(__name__)


IDENTIFIER = Word(
f"{string.ascii_letters}_", f"{string.ascii_letters + string.digits}_"
).setResultsName("identifier")


def _valid_event_name(event_name):
"""
Helper function to check whether a name is a valid name for an event.
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7 changes: 4 additions & 3 deletions brian2/parsing/statements.py
Original file line number Diff line number Diff line change
Expand Up @@ -6,13 +6,14 @@
Regex,
Suppress,
Word,
alphas,
nums,
pyparsing_unicode,
)

from brian2.utils.caching import cached

VARIABLE = Word(f"{alphas}_", f"{alphas + nums}_").setResultsName("variable")
VARIABLE = Word(
pyparsing_unicode.alphas + "_", pyparsing_unicode.alphanums + "_"
).setResultsName("variable")

OP = Regex(r"(\+|\-|\*|/|//|%|\*\*|>>|<<|&|\^|\|)?=").setResultsName("operation")
EXPR = Combine(
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43 changes: 42 additions & 1 deletion brian2/tests/test_neurongroup.py
Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@

from brian2.core.base import BrianObjectException
from brian2.core.clocks import defaultclock
from brian2.core.functions import implementation
from brian2.core.magic import run
from brian2.core.network import Network
from brian2.core.preferences import prefs
Expand All @@ -19,7 +20,11 @@
from brian2.synapses.synapses import Synapses
from brian2.tests.utils import assert_allclose, exc_isinstance
from brian2.units.allunits import second, volt
from brian2.units.fundamentalunits import DimensionMismatchError, have_same_dimensions
from brian2.units.fundamentalunits import (
DimensionMismatchError,
check_units,
have_same_dimensions,
)
from brian2.units.stdunits import Hz, ms, mV
from brian2.units.unitsafefunctions import linspace
from brian2.utils.logger import catch_logs
Expand Down Expand Up @@ -2217,6 +2222,41 @@ def test_semantics_mod():
assert_allclose(G.y[:], float_values % 98)


@pytest.mark.standalone_compatible
def test_unicode_identifiers():
# Test support for unicode variable names, function names, and constants
τ = 10 * ms

@implementation(
"cpp",
"""
double π_times(double x) {
return M_PI*x;
}
""",
)
@implementation(
"cython",
"""
cdef double π_times(double x):
return M_PI*x
""",
)
@check_units(x=1 / second, result=1 / second)
def π_times(x):
return np.pi * x

eqs = """
dv/dt = -v / τ + π_times(σ) : 1
σ : 1/second"""
group = NeuronGroup(2, eqs)
group.σ = [1, 2] * Hz

run(5 * ms)
assert_allclose(group.v, [0.012361203888596196, 0.024722407777192392])
assert_equal(group.σ, [1, 2] * Hz)


if __name__ == "__main__":
test_set_states()
test_creation()
Expand Down Expand Up @@ -2292,3 +2332,4 @@ def test_semantics_mod():
test_semantics_floor_division()
test_semantics_floating_point_division()
test_semantics_mod()
test_unicode_identifiers()
15 changes: 8 additions & 7 deletions brian2/utils/stringtools.py
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,6 @@
"""

import re
import string

__all__ = [
"indent",
Expand All @@ -18,6 +17,8 @@
"SpellChecker",
]

from pyparsing import pyparsing_unicode


def indent(text, numtabs=1, spacespertab=4, tab=None):
"""
Expand Down Expand Up @@ -164,7 +165,7 @@ def get_identifiers(expr, include_numbers=False):
"""
Return all the identifiers in a given string ``expr``, that is everything
that matches a programming language variable like expression, which is
here implemented as the regexp ``\\b[A-Za-z_][A-Za-z0-9_]*\\b``.
here implemented as the regexp ``\b([^\\W\\d]|_)\\w*\b``.
Parameters
----------
Expand All @@ -180,15 +181,15 @@ def get_identifiers(expr, include_numbers=False):
Examples
--------
>>> expr = '3-a*_b+c5+8+f(A - .3e-10, tau_2)*17'
>>> expr = '3-a*_b+c5+8+f(A - .3e-10, tau_2, σ)*17'
>>> ids = get_identifiers(expr)
>>> print(sorted(list(ids)))
['A', '_b', 'a', 'c5', 'f', 'tau_2']
['A', '_b', 'a', 'c5', 'f', 'tau_2', 'σ']
>>> ids = get_identifiers(expr, include_numbers=True)
>>> print(sorted(list(ids)))
['.3e-10', '17', '3', '8', 'A', '_b', 'a', 'c5', 'f', 'tau_2']
"""
identifiers = set(re.findall(r"\b[A-Za-z_][A-Za-z0-9_]*\b", expr))
identifiers = set(re.findall(r"\b(?:[^\W\d]|_)\w*\b", expr))
if include_numbers:
# only the number, not a + or -
numbers = set(
Expand Down Expand Up @@ -286,10 +287,10 @@ class SpellChecker:
The known words
alphabet : iterable of str, optional
The allowed characters. Defaults to the characters allowed for
identifiers, i.e. ascii characters, digits and the underscore.
identifiers, i.e. characters, digits and the underscore.
"""

def __init__(self, words, alphabet=f"{string.ascii_lowercase + string.digits}_"):
def __init__(self, words, alphabet=f"{pyparsing_unicode.alphanums}_"):
self.words = words
self.alphabet = alphabet

Expand Down

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