add config files

broadinstitute · May 31, 2024 · c9f438c · c9f438c
1 parent 877d246
commit c9f438c
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Showing 4 changed files with 29 additions and 0 deletions.
diff --git a/6.downstream_analysis_snakemake/inputs/configs/batch4.json b/6.downstream_analysis_snakemake/inputs/configs/batch4.json
@@ -0,0 +1,5 @@
+{
+    "Metadata_Batch": "2023-12-15_B4A4R1",
+    "cell_count_col": "Metadata_Object_Count",
+    "parallel": true
+}
diff --git a/6.downstream_analysis_snakemake/inputs/configs/batch6.json b/6.downstream_analysis_snakemake/inputs/configs/batch6.json
@@ -0,0 +1,8 @@
+{
+    "Metadata_Batch": "2023-12-21_B6A3R2",
+    "cell_count_col": "Metadata_Object_Count",
+    "parallel": true,
+    "pipeline": "profiles_tcdropped_filtered_var_mad_outlier_featselect",
+    "transfection_col": "Metadata_node_type",
+    "trasfection_pert": ["TC"]
+}
diff --git a/6.downstream_analysis_snakemake/inputs/configs/batch7.json b/6.downstream_analysis_snakemake/inputs/configs/batch7.json
@@ -0,0 +1,8 @@
+{
+    "Metadata_Batch": "2024_01_23_Batch_7",
+    "cell_count_col": "Metadata_Object_Count",
+    "parallel": true,
+    "pipeline": "profiles_tcdropped_filtered_var_mad_outlier_featselect",
+    "transfection_col": "Metadata_control_type",
+    "trasfection_pert": ["TC"]
+}
diff --git a/6.downstream_analysis_snakemake/inputs/configs/batch8.json b/6.downstream_analysis_snakemake/inputs/configs/batch8.json
@@ -0,0 +1,8 @@
+{
+    "Metadata_Batch": "2024_02_06_Batch_8",
+    "cell_count_col": "Metadata_Object_Count",
+    "parallel": true,
+    "pipeline": "profiles_tcdropped_filtered_var_mad_outlier_featselect",
+    "transfection_col": "Metadata_control_type",
+    "trasfection_pert": ["TC"]
+}