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Release 2.4.0
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@alecw alecw released this 15 Sep 21:33
· 292 commits to master since this release
v2.4.0
3d2b3d8
  • Census-seq tools and documentation (CensusSeq, RollCall, CsiAnalysis)
  • New program SplitBamByCell - partitions a large BAM into many smaller BAMs by cell barcodes, so that each cell barcode is contained in only one output BAM, and BAMs have roughly the same size.
  • More flexible DGE merging
  • New program CountUnmatchedSampleIndices
  • Upgrade to Picard 2.20.5
  • Add option to FilterBam and FilterBamByTag to fail if not enough reads pass filter
  • Many bug fixes -- git log v2.3.0..v2.4.0 to view

See the Drop-seq alignment cookbook and Census-seq computational protocols for detailed usage instructions, diagrams, and explanations of how these new systems work. For more information about Census-seq, see our manuscript on bioRxiv

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