moved ignore_missing_imports under pytest in pyproject.toml #355
Workflow file for this run
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| name: Integration Tests | |
| # Controls when the action will run. | |
| # Triggers the workflow on push or pull request events | |
| on: [push, workflow_dispatch] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python: [ '3.9', '3.10', '3.11'] | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| # Setup Python allows the tox test to run on py version specified in git matrix. | |
| - name: Setup Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install Dev Requirements | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r dev-requirements.txt | |
| - name: Pull and setup mysql dockers | |
| # Parameters set in the command below must be reused in the cromwell | |
| # config file: tests/resources/cromwell_application.conf | |
| run: | | |
| docker run \ | |
| -p 3306:3306 \ | |
| --ip=172.17.0.2 \ | |
| --name NameOfTheContainer \ | |
| -e MYSQL_ROOT_PASSWORD=YourPassword \ | |
| -e MYSQL_DATABASE=DatabaseName \ | |
| -e MYSQL_USER=ChooseAName \ | |
| -e MYSQL_PASSWORD=YourOtherPassword \ | |
| -d \ | |
| mysql/mysql-server:5.5 | |
| - name: Pull and setup cromwell docker | |
| run: | | |
| export CROMWELL_TAG=$(curl -s https://api.github.com/repos/broadinstitute/cromwell/releases/latest | \ | |
| grep -o '"tag_name": "[^"]*' | \ | |
| grep -o '[^"]*$' | \ | |
| grep -Eo "^[0-9]+") | |
| docker run \ | |
| -p 8000:8000 \ | |
| -v ${PWD}/tests/resources/cromwell_application.conf:/cromwell_application.conf \ | |
| --name CromwellContainer \ | |
| -e JAVA_OPTS="-Dconfig.file=/cromwell_application.conf" \ | |
| -d broadinstitute/cromwell:${CROMWELL_TAG} server | |
| # Give cromwell server time to setup | |
| sleep 1m | |
| - name: Install Tox | |
| run: pip install tox | |
| - name: Run Tox integration tests | |
| # Run tox using the version of Python in `PATH` | |
| run: tox -e integration |