[DSM] PEPPER-1402 PEPPER-1397 refactoring DSM event transmission into DSS and retrying failed events #2874
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| Original file line number | Diff line number | Diff line change |
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| package org.broadinstitute.dsm.juniperkits; | ||
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| import static org.broadinstitute.ddp.db.TransactionWrapper.inTransaction; | ||
| import static org.broadinstitute.dsm.service.admin.UserAdminService.PEPPER_ADMIN_ROLE; | ||
| import static org.broadinstitute.dsm.statics.DBConstants.KIT_SHIPPING; | ||
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| import java.sql.Connection; | ||
| import java.sql.PreparedStatement; | ||
| import java.sql.ResultSet; | ||
| import java.sql.SQLException; | ||
| import java.util.Arrays; | ||
| import java.util.Collections; | ||
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| import lombok.Getter; | ||
| import lombok.extern.slf4j.Slf4j; | ||
| import org.broadinstitute.dsm.kits.BaseKitTestUtil; | ||
| import org.broadinstitute.lddp.db.SimpleResult; | ||
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| /** | ||
| * This class has methods to set up a study in DSM database that has the needed configuration to send out kits | ||
| * It creates the instance, group, instance_role, kit_type, carrier, | ||
| * kit_dimensions, kit_return and ddp_kit_request_settings for the | ||
| * newly created study. | ||
| * It also contains methods to delete what was set up after tests are complete | ||
| * </p> | ||
| * <p> | ||
| * The usage is by first creating an instance of this class by declaring the desired instance name and study guid, | ||
| * display name and collaborator prefix. | ||
| * Then call setupJuniperInstanceAndSettings() for initiating all the config in database. | ||
| *When done, call deleteJuniperInstanceAndSettings() to delete everything | ||
| * </p> | ||
| */ | ||
| @Slf4j | ||
| @Getter | ||
| public class JuniperKitUtil extends BaseKitTestUtil { | ||
|
There was a problem hiding this comment. This class has the config setup and what else that is only related to Juniper kits |
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| private Integer instanceRoleId; | ||
| private Integer ddpInstanceRoleId; | ||
| private String displayName; | ||
| private String collaboratorPrefix; | ||
| private static String esIndex = null; | ||
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| public JuniperKitUtil(String instanceName, String studyGuid, String displayName, String collaboratorPrefix, String groupName) { | ||
| super(instanceName, studyGuid, groupName); | ||
| this.displayName = displayName; | ||
| this.collaboratorPrefix = collaboratorPrefix; | ||
| } | ||
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| public void setupJuniperInstanceAndSettings() { | ||
| //everything should get inserted in one transaction | ||
| SimpleResult results = inTransaction((conn) -> { | ||
| SimpleResult simpleResult = new SimpleResult(); | ||
| try { | ||
| adminUtil.createRealmAndStudyGroup(instanceName, studyGuid, collaboratorPrefix, groupName, esIndex); | ||
| ddpInstanceId = adminUtil.getDdpInstanceId(); | ||
| ddpGroupId = adminUtil.getStudyGroupId(); | ||
| instanceRoleId = getJuniperStudyInstanceRole(conn); | ||
| ddpInstanceRoleId = createDdpInstanceRole(conn, instanceRoleId); | ||
| kitTypeId = getKitTypeId(conn); | ||
| kitDimensionId = createKitDimension(conn); | ||
| kitReturnId = createKitReturnInformation(conn); | ||
| carrierId = createCarrierInformation(conn); | ||
| ddpKitRequestSettingsId = createKitRequestSettingsInformation(conn); | ||
| adminUtil.setStudyAdminAndRoles(generateUserEmail(), PEPPER_ADMIN_ROLE, | ||
| Arrays.asList(KIT_SHIPPING)); | ||
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| userWithKitShippingAccess = Integer.toString(adminUtil.createTestUser(generateUserEmail(), | ||
| Collections.singletonList(KIT_SHIPPING))); | ||
| } catch (SQLException e) { | ||
| simpleResult.resultException = e; | ||
| } | ||
| return simpleResult; | ||
| }); | ||
| if (results.resultException != null) { | ||
| log.error("Error creating data ", results.resultException); | ||
| deleteInstanceAndSettings(); | ||
| } | ||
| } | ||
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| public void deleteInstanceAndSettings() { | ||
| SimpleResult results = inTransaction((conn) -> { | ||
| SimpleResult dbVals = new SimpleResult(); | ||
| try { | ||
| delete(conn, "kit_dimension", "kit_dimension_id", kitDimensionId); | ||
| delete(conn, "kit_return_information", "kit_return_id", kitReturnId); | ||
| delete(conn, "carrier_service", "carrier_service_id", carrierId); | ||
| delete(conn, "ddp_kit_request_settings", "ddp_kit_request_settings_id", ddpKitRequestSettingsId); | ||
| delete(conn, "ddp_instance_role", "ddp_instance_role_id", ddpInstanceRoleId); | ||
| delete(conn, "ddp_instance_group", "instance_group_id", ddpInstanceGroupId); | ||
| delete(conn, "ddp_instance", "ddp_instance_id", ddpInstanceId); | ||
| delete(conn, "ddp_group", "group_id", ddpGroupId); | ||
| adminUtil.deleteGeneratedData(); | ||
| } catch (Exception e) { | ||
| dbVals.resultException = e; | ||
| } | ||
| return dbVals; | ||
| }); | ||
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| } | ||
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| private String generateUserEmail() { | ||
| return "JuniperTest-" + System.currentTimeMillis() + "@broad.dev"; | ||
| } | ||
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| private Integer getJuniperStudyInstanceRole(Connection conn) throws SQLException { | ||
| if (instanceRoleId != null) { | ||
| return instanceRoleId; | ||
| } | ||
| PreparedStatement stmt = conn.prepareStatement(SELECT_INSTANCE_ROLE); | ||
| stmt.setString(1, "juniper_study"); | ||
| ResultSet rs = stmt.executeQuery(); | ||
| return getPrimaryKey(rs, "instance_role"); | ||
| } | ||
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| } | ||
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I increased the initial interval