post release bugfixes #36
Workflow file for this run
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| name: unit tests | |
| # Run the test suite on pushes (incl. merges) to main | |
| # Run the test suite when a PR is opened, pushed to, or reopened | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| types: [opened, synchronize, reopened] | |
| jobs: | |
| unit_tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.10'] | |
| services: | |
| # Label used to access the service container | |
| postgres: | |
| # Docker Hub image | |
| image: postgres | |
| # Provide the password for postgres | |
| env: | |
| POSTGRES_PASSWORD: "super-secure-password" | |
| # Set health checks to wait until postgres has started | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| # Maps tcp port 5432 on service container to the host | |
| - 5432:5432 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up chart-testing | |
| uses: helm/[email protected] | |
| - name: Add bitnami | |
| run: helm repo add bitnami https://charts.bitnami.com/bitnami | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Chart Lint | |
| run: ct lint --all | |
| - name: Create kind cluster | |
| uses: helm/[email protected] | |
| - name: Run Chart Templating Unit Tests | |
| run: python3 -m unittest unit_test/**/*.py | |
| - name: Test Seqr Chart Installation | |
| run: | | |
| # This hack us skip some expensive setup within the seqr startup | |
| export PGPASSWORD='super-secure-password'; psql -h localhost -U postgres -c 'CREATE DATABASE seqrdb'; | |
| # Add secrets | |
| kubectl create secret generic postgres-secrets --from-literal=password='super-secure-password' | |
| kubectl create secret generic seqr-secrets --from-literal=django_key='securely-generated-key' | |
| # The extra variable is to allow kubernetes to ping our postrgres running locally | |
| ct install --charts charts/seqr --namespace default --helm-extra-set-args "--set=environment.POSTGRES_SERVICE_HOSTNAME=172.17.0.1" |