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annotations in mem (#33)
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* annotations in mem

* Bump version
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bpblanken authored Jan 10, 2024
1 parent 871589b commit 2a71397
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Showing 2 changed files with 4 additions and 4 deletions.
2 changes: 1 addition & 1 deletion charts/hail-search/Chart.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ type: application
# This is the chart version. This version number should be incremented each time you make changes
# to the chart and its templates, including the app version.
# Versions are expected to follow Semantic Versioning (https://semver.org/)
version: 0.1.22
version: 0.1.23

# This is the version number of the application being deployed. This version number should be
# incremented each time you make changes to the application. Versions are not expected to
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6 changes: 3 additions & 3 deletions charts/hail-search/values.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,7 @@ initContainers: |-
{{ if $version }}
- name: mkdir-{{ $path | replace "/" "-" | replace "_" "-" | lower}}
image: busybox:1.35
command: ['/bin/mkdir', '-p', '{{ $.Values.environment.DATASETS_DIR }}/{{ $path | replace "SV" "SV_WGS" | replace "GCNV" "SV_WES"}}']
command: ['/bin/mkdir', '-p', '{{ $.Values.environment.DATASETS_DIR }}/{{ $path | replace "SV" "SV_WGS" | replace "GCNV" "SV_WES"}}/annotations.ht']
volumeMounts:
- mountPath: {{ $.Values.environment.DATASETS_DIR }}
name: datasets
Expand All @@ -51,13 +51,13 @@ initContainers: |-
name: ssd-datasets
- name: sync-{{ $path | replace "/" "-" | replace "_" "-" | lower}}
image: gcr.io/google.com/cloudsdktool/google-cloud-cli:latest
command: ['gsutil', '-m', 'rsync', '-r', '-x', '.*families.*', '{{ $.Values.global.hail_search.sourceDatasetsDir }}/{{ $path }}/runs/{{ $version }}', '{{ $.Values.environment.DATASETS_DIR }}/{{ $path | replace "SV" "SV_WGS" | replace "GCNV" "SV_WES"}}']
command: ['gsutil', '-m', 'rsync', '-r', '{{ $.Values.global.hail_search.sourceDatasetsDir }}/{{ $path }}/runs/{{ $version }}/annotations.ht', '{{ $.Values.environment.DATASETS_DIR }}/{{ $path | replace "SV" "SV_WGS" | replace "GCNV" "SV_WES"}}']
volumeMounts:
- mountPath: {{ $.Values.environment.DATASETS_DIR }}
name: datasets
- name: sync-ssd-{{ $path | replace "/" "-" | replace "_" "-" | lower}}
image: gcr.io/google.com/cloudsdktool/google-cloud-cli:latest
command: ['gsutil', '-m', 'rsync', '-r', '{{ $.Values.global.hail_search.sourceDatasetsDir }}/{{ $path }}/runs/{{ $version }}/families', '{{ $.Values.environment.SSD_DATASETS_DIR }}/{{ $path | replace "SV" "SV_WGS" | replace "GCNV" "SV_WES"}}/families']
command: ['gsutil', '-m', 'rsync', '-r', '-x', '.*families.*', '{{ $.Values.global.hail_search.sourceDatasetsDir }}/{{ $path }}/runs/{{ $version }}', '{{ $.Values.environment.SSD_DATASETS_DIR }}/{{ $path | replace "SV" "SV_WGS" | replace "GCNV" "SV_WES"}}']
volumeMounts:
- mountPath: {{ $.Values.environment.SSD_DATASETS_DIR }}
name: ssd-datasets
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