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broadinstitute · Oct 15, 2024 · 5faa534 · 5faa534
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diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -1,7 +1,7 @@
 repos:
--   repo: https://github.com/norwoodj/helm-docs
+  - repo: https://github.com/norwoodj/helm-docs
     rev: v1.14.2
     hooks:
     - id:  helm-docs
       args:
-        - --document-dependency-values
+        - --document-dependency-values
diff --git a/charts/hail-search/README.md b/charts/hail-search/README.md
@@ -1,6 +1,6 @@
 # hail-search
 
-![Version: 0.2.11-dev](https://img.shields.io/badge/Version-0.2.11--dev-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: c0142205f184e98a002b728625fccf97d88d4f04](https://img.shields.io/badge/AppVersion-c0142205f184e98a002b728625fccf97d88d4f04-informational?style=flat-square)
+![Version: 0.3.0](https://img.shields.io/badge/Version-0.3.0-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: c0142205f184e98a002b728625fccf97d88d4f04](https://img.shields.io/badge/AppVersion-c0142205f184e98a002b728625fccf97d88d4f04-informational?style=flat-square)
 
 A Helm chart for deploying the hail backend of Seqr, an open source software platform for rare disease genomics
 

diff --git a/charts/pipeline-runner/README.md b/charts/pipeline-runner/README.md
@@ -1,6 +1,6 @@
 # pipeline-runner
 
-![Version: 0.1.15-dev](https://img.shields.io/badge/Version-0.1.15--dev-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: 92f827224f608388fc4e20be60a08b1f675c7408](https://img.shields.io/badge/AppVersion-92f827224f608388fc4e20be60a08b1f675c7408-informational?style=flat-square)
+![Version: 0.2.0](https://img.shields.io/badge/Version-0.2.0-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: ffa085dca1e1c8a4a168345468f795a141dd63f1](https://img.shields.io/badge/AppVersion-ffa085dca1e1c8a4a168345468f795a141dd63f1-informational?style=flat-square)
 
 A Helm chart for deploying the loading pipeline of Seqr, an open source software platform for rare disease genomics
 
@@ -325,15 +325,6 @@ true
 			<td><pre lang="json">
 {}
 </pre>
-</td>
-			<td></td>
-		</tr>
-		<tr>
-			<td>replicaCount</td>
-			<td>int</td>
-			<td><pre lang="json">
-1
-</pre>
 </td>
 			<td></td>
 		</tr>
@@ -377,7 +368,7 @@ true
 			<td>volumeMounts</td>
 			<td>string</td>
 			<td><pre lang="json">
-"- name: seqr-datasets\n  mountPath: /var/seqr\n  readOnly: false\n- name: luigi-config\n  mountPath: /etc/luigi/luigi.cfg\n  subPath: luigi.cfg"
+"- name: seqr-datasets\n  mountPath: /var/seqr\n  readOnly: false\n- name: docker-socket\n  mountPath: /var/run/docker.sock\n  readOnly: false\n- name: luigi-config\n  mountPath: /etc/luigi/luigi.cfg\n  subPath: luigi.cfg"
 </pre>
 </td>
 			<td></td>
@@ -386,7 +377,7 @@ true
 			<td>volumes</td>
 			<td>string</td>
 			<td><pre lang="json">
-"- name: seqr-datasets\n  persistentVolumeClaim:\n    readOnly: false\n    claimName: {{ include \"lib.pvc-name\" . }}\n- name: luigi-config\n  configMap:\n    name: luigi-config\n    items:\n      - key: luigi.cfg\n        path: luigi.cfg"
+"- name: seqr-datasets\n  persistentVolumeClaim:\n    readOnly: false\n    claimName: {{ include \"lib.pvc-name\" . }}\n- name: docker-socket\n  hostPath:\n    path: /var/run/docker.sock\n- name: luigi-config\n  configMap:\n    name: luigi-config\n    items:\n      - key: luigi.cfg\n        path: luigi.cfg"
 </pre>
 </td>
 			<td></td>

diff --git a/charts/seqr-platform/README.md b/charts/seqr-platform/README.md
@@ -1,6 +1,6 @@
 # seqr-platform
 
-![Version: 0.1.20-dev](https://img.shields.io/badge/Version-0.1.20--dev-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square)
+![Version: 0.1.21-dev](https://img.shields.io/badge/Version-0.1.21--dev-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square)
 
 A Helm chart for deploying all components of Seqr, an open source software platform for rare disease genomics
 
@@ -22,7 +22,7 @@ A Helm chart for deploying all components of Seqr, an open source software platf
 |------------|------|---------|
 | https://broadinstitute.github.io/seqr-helm | hail-search | 0.2.11-dev |
 | https://broadinstitute.github.io/seqr-helm | lib | 0.1.4 |
-| https://broadinstitute.github.io/seqr-helm | pipeline-runner | 0.1.15-dev |
+| https://broadinstitute.github.io/seqr-helm | pipeline-runner | 0.1.17-dev |
 | https://broadinstitute.github.io/seqr-helm | seqr | 1.1.14-dev |
 
 ## Values

diff --git a/charts/seqr/README.md b/charts/seqr/README.md
@@ -1,6 +1,6 @@
 # seqr
 
-![Version: 1.1.14-dev](https://img.shields.io/badge/Version-1.1.14--dev-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: ccdaa1e872e782d6f7016a90e2d3f2a565351805](https://img.shields.io/badge/AppVersion-ccdaa1e872e782d6f7016a90e2d3f2a565351805-informational?style=flat-square)
+![Version: 1.2.0](https://img.shields.io/badge/Version-1.2.0-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: ccdaa1e872e782d6f7016a90e2d3f2a565351805](https://img.shields.io/badge/AppVersion-ccdaa1e872e782d6f7016a90e2d3f2a565351805-informational?style=flat-square)
 
 A Helm chart for deploying the Seqr app, an open source software platform for rare disease genomics
 
@@ -140,6 +140,24 @@ false
 			<td><pre lang="json">
 "/var/seqr/seqr-loading-temp"
 </pre>
+</td>
+			<td></td>
+		</tr>
+		<tr>
+			<td>environment.LUIGI_UI_SERVICE_HOSTNAME</td>
+			<td>string</td>
+			<td><pre lang="json">
+"pipeline-runner-ui"
+</pre>
+</td>
+			<td></td>
+		</tr>
+		<tr>
+			<td>environment.LUIGI_UI_SERVICE_PORT</td>
+			<td>string</td>
+			<td><pre lang="json">
+"8082"
+</pre>
 </td>
 			<td></td>
 		</tr>