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Update README.md
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bpblanken authored Oct 31, 2024
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Expand Up @@ -26,15 +26,15 @@ Install the four required kubernetes infrastructure components:
Then:
1. Create a local `/var/seqr` directory to be mounted into the Kubernetes cluster. This will host all seqr application data:
```
mkdir -p /var/seqr
chmod 777 /var/seqr
sudo mkdir -p /var/seqr
sudo chmod 777 /var/seqr
```
1. Start a `kind` cluster:
```
curl https://raw.githubusercontent.com/broadinstitute/seqr-helm/refs/heads/main/kind.yaml > kind.yaml
kind create cluster --config kind.yaml
```
*Note that kubernetes can have unexpected behavior when run with `sudo`. Make sure to run this and all other commands without it*
*Note that kubernetes can have unexpected behavior when run with `sudo`. Make sure to run this and all other `kubectl`/`kind`/`helm` commands without it*
1. Create the [Required Secrets](#required-secrets) in your cluster using `kubectl`.
1. [Migrate](#migrating-application-data) any existing application data.
1. Install the `seqr-platform` chart with any [override values](#valuesenvironment-overrides):
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