some bugfixes

broadinstitute · Nov 14, 2023 · b06c6ec · b06c6ec
1 parent 1be14d7
commit b06c6ec
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Showing 2 changed files with 4 additions and 2 deletions.
diff --git a/.github/workflows/unit_tests.yaml b/.github/workflows/unit_tests.yaml
@@ -34,3 +34,5 @@ jobs:
         uses: helm/[email protected]
       - name: Run Chart Templating Unit Tests
         run: python3 -m unittest unit_test/**/*.py
+      - name: Test hail search install
+        run: ct install --charts charts/hail-search
diff --git a/charts/hail-search/values.yaml b/charts/hail-search/values.yaml
@@ -2,7 +2,7 @@
 # This is a YAML-formatted file.
 # Declare variables to be passed into your templates.
 
-replicaCount: 4
+replicaCount: 1
 
 image:
   repository: gcr.io/seqr-project/seqr-hail-search
@@ -53,7 +53,7 @@ initContainers: |-
   {{- range $path, $queries := $.Values.cachedReferenceDatasetQueries -}}
   - name: mkdir-{{ $path | replace "/" "-" | replace "_" "-" | lower}}
     image: busybox:1.35
-    command: ['/bin/mkdir', '-p', '{{ $.Values.environment.DATASETS_DIR }}/{{ $path | replace "SV" "SV_WGS" | replace "GCNV" "SV_WES"}}']
+    command: ['/bin/mkdir', '-p', '{{ $.Values.environment.DATASETS_DIR }}/{{ $path }}']
     volumeMounts:
       - mountPath: {{ $.Values.environment.DATASETS_DIR }}
         name: datasets