Np add multisamplesnss2 h5ad script #500
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| #This action was copied over from WARP's repo. | |
| #It is used to scan docker images for vulnerabilities. | |
| name: DSP AppSec Trivy Checks | |
| on: | |
| pull_request: | |
| branches: [ "develop", "master" ] | |
| paths-ignore: | |
| - '**/README.md' | |
| jobs: | |
| build-and-scan: | |
| name: DSP AppSec Trivy check | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| context: | |
| - 3rd-party-tools/arrays-picard-private | |
| - 3rd-party-tools/dragmap | |
| - 3rd-party-tools/gatk | |
| - 3rd-party-tools/illumina-iaap-autocall | |
| - 3rd-party-tools/picard-python | |
| - 3rd-party-tools/verify-bam-id | |
| - 3rd-party-tools/samtools | |
| - 3rd-party-tools/samtools-picard-bwa | |
| - 3rd-party-tools/samtools-star | |
| - 3rd-party-tools/zcall | |
| - 3rd-party-tools/bcftools-vcftools | |
| - 3rd-party-tools/eagle | |
| - 3rd-party-tools/minimac4 | |
| - 3rd-party-tools/fgbio | |
| - 3rd-party-tools/umi-tools | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: broadinstitute/dsp-appsec-trivy-action@v1 | |
| with: | |
| context: ${{ matrix.context }} | |
| #TODO: Check if we really need this. This seems to scan a prebuilt image that we didn't build. | |
| prebuilt-scan: | |
| name: DSP AppSec Trivy check | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| image: | |
| - us.gcr.io/broad-gotc-prod/picard-cloud:2.26.10 | |
| steps: | |
| - uses: broadinstitute/dsp-appsec-trivy-action@v1 | |
| with: | |
| image: ${{ matrix.image }} |