updated percents to actual percents

broadinstitute · Sep 21, 2024 · ef9e2ff · ef9e2ff
1 parent 8d2d663
commit ef9e2ff
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/3rd-party-tools/star-merge-npz/scripts/combine_shard_metrics.py b/3rd-party-tools/star-merge-npz/scripts/combine_shard_metrics.py
@@ -93,8 +93,8 @@ def merge_matrices(summary_file, align_file, cell_reads, counting_mode, uniform_
     total_genes_unique_detected = len(unique_rows)
 
 
-    percent_target = estimated_cells/expected_cells
-    percent_intronic_reads = reads_mapped_confidently_to_intronic_regions/n_reads
+    percent_target = estimated_cells/expected_cells*100
+    percent_intronic_reads = reads_mapped_confidently_to_intronic_regions/n_reads*100
 
     data = {
         "number_of_reads": [n_reads],

diff --git a/tools/scripts/add_library_tso_doublets.py b/tools/scripts/add_library_tso_doublets.py
@@ -127,8 +127,8 @@ def process_gex_data(gex_h5ad_modified, gex_nhash_id, library_csv, input_id, dou
     dictionary['keeper_cells'] = keeper_cells
     dictionary['keeper_mean_reads_per_cell'] = keeper_mean_reads_per_cell
     dictionary['keeper_median_genes'] = keeper_median_genes
-    dictionary['percent_keeper'] = percent_keeper
-    dictionary['percent_usable'] = percent_usable
+    dictionary['percent_keeper'] = percent_keeper*100
+    dictionary['percent_usable'] = percent_usable*100
 
     new_dictionary = {"NHashID": [gex_nhash_id]}  # This line is fine, it already has a list
     # Update other scalar values to lists