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name: PLINK2 REGENIE CI | ||
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# Controls when the workflow will run | ||
on: | ||
# Triggers the workflow on push or pull request events but only for the "develop" and "master" branch | ||
pull_request: | ||
branches: [ "develop", "master" ] | ||
paths: | ||
- '3rd-party-tools/plink-regenie/**' | ||
# Allows you to run this workflow manually from the Actions tab | ||
workflow_dispatch: | ||
inputs: | ||
image_tag: | ||
description: 'Docker Image Tag (default: branch_name)' | ||
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||
env: | ||
PROJECT_NAME: WARP 3rd Party Tools | ||
# Github repo name | ||
REPOSITORY_NAME: ${{ github.event.repository.name }} | ||
# Region-specific Google Docker repository where GOOGLE_PROJECT/REPOSITORY_NAME can be found | ||
DOCKER_REGISTRY: us.gcr.io | ||
GCR_PATH: broad-gotc-prod/plink-regenie | ||
ACR_PATH: plink-regenie | ||
TAG: ${{ github.event.inputs.image_tag || github.head_ref || github.ref_name }} | ||
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||
# A workflow run is made up of one or more jobs that can run sequentially or in parallel | ||
jobs: | ||
# The job that builds our container | ||
build-for-gcr: | ||
runs-on: ubuntu-latest | ||
defaults: | ||
run: | ||
working-directory: 3rd-party-tools/plink-regenie | ||
# Map a step output to a job output | ||
outputs: | ||
imagePath: ${{ steps.saveImagePath.outputs.url }} | ||
steps: | ||
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | ||
- uses: actions/checkout@v3 | ||
- name: Build the Docker image | ||
run: docker build . --file Dockerfile --tag ${DOCKER_REGISTRY}/${GCR_PATH}:${TAG} | ||
- name: Check working directory' | ||
run: | | ||
echo "Current directory: " | ||
pwd | ||
ls -lht | ||
# Save the image path to an output | ||
- id: 'saveImagePath' | ||
run: echo "url=${DOCKER_REGISTRY}/${GCR_PATH}:${TAG}" >> $GITHUB_OUTPUT | ||
# Log into the Google Docker registry | ||
- id: 'Auth' | ||
name: Login to GCR | ||
uses: docker/login-action@v2 | ||
with: | ||
registry: ${{ env.DOCKER_REGISTRY }} | ||
username: _json_key | ||
password: ${{ secrets.GCR_CI_KEY }} | ||
# Push the image to the Google Docker registry | ||
- name: Push image | ||
run: "docker push ${DOCKER_REGISTRY}/${GCR_PATH}:${TAG}" | ||
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||
build-for-acr: | ||
runs-on: ubuntu-latest | ||
defaults: | ||
run: | ||
working-directory: 3rd-party-tools/plink-regenie | ||
steps: | ||
# checkout the repo | ||
- name: 'Checkout GitHub Action' | ||
uses: actions/checkout@v3 | ||
|
||
- name: 'Login via Azure CLI' | ||
uses: azure/login@v1 | ||
with: | ||
creds: ${{ secrets.AZURE_CREDENTIALS }} | ||
- name: 'Build and push image' | ||
uses: azure/docker-login@v1 | ||
with: | ||
login-server: ${{ secrets.REGISTRY_LOGIN_SERVER }} | ||
username: ${{ secrets.REGISTRY_USERNAME }} | ||
password: ${{ secrets.REGISTRY_PASSWORD }} | ||
- run: | | ||
docker build . -t ${{ secrets.REGISTRY_LOGIN_SERVER }}/${ACR_PATH}:${TAG} | ||
docker push ${{ secrets.REGISTRY_LOGIN_SERVER }}/${ACR_PATH}:${TAG} |
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