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  1. broadinstitute/gatk broadinstitute/gatk Public

    Official code repository for GATK versions 4 and up

    Java 1.7k 591

  2. broadinstitute/long-read-pipelines broadinstitute/long-read-pipelines Public

    Long read production pipelines

    Jupyter Notebook 142 25

  3. broadinstitute/cromshell broadinstitute/cromshell Public

    CLI for interacting with Cromwell servers

    Python 53 15