Merge branch 'hotfix/1.13.4'

cancerit · Sep 8, 2018 · df19022 · df19022
2 parents b6b09ca + 0cc5e01
commit df19022
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Showing 3 changed files with 7 additions and 2 deletions.
diff --git a/CHANGES.md b/CHANGES.md
@@ -1,5 +1,10 @@
 # CHANGES
 
+## 1.13.4
+
+* Fix incorrect file path introduced in 1.13.3
+* Fixes #82
+
 ## 1.13.3
 
 * Add gzbuffer call after gzopen to ensure we don't hit the limit where many contigs are printed

diff --git a/Makefile b/Makefile
@@ -1,4 +1,4 @@
-CAVEMAN_VERSION=1.13.3
+CAVEMAN_VERSION=1.13.4
 TEST_REF?=""
 #Compiler
 CC?=gcc

diff --git a/src/estep.c b/src/estep.c
@@ -515,7 +515,7 @@ int estep_main(int argc, char *argv[]){
 	//Open files for output
     uint32_t no_contigs = 0;
     uint32_t total_contigs_length = 0;
-    int res_contig_cnt = fai_access_get_count_length_all_contigs(fa_file, &no_contigs, &total_contigs_length);
+    int res_contig_cnt = fai_access_get_count_length_all_contigs(ref_idx, &no_contigs, &total_contigs_length);
     check(res_contig_cnt==0, "Error establishing contig count and name length.");
 
     uint64_t buf_sz = (no_contigs * (strlen(contig_str) + strlen(assembly) + strlen(species) + 20 )) + total_contigs_length;