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2.5.0 Can run Infuse pipeline through CLI and CWL

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@byb121 byb121 released this 11 Nov 15:38
· 26 commits to dev since this release
2.5.0
bd98e77
  • Added run-cgprna subcommands: tophat-fusion, start-fusion and defuse to run infuse pipeline.
  • Re-organized expected file structure in Star reference bundle. Previous Star reference bundle on the FTP server will not work for this version.
  • Added CWL files to run Infuse pipeline in cgpRna and example JSON files for using them with Dockstore.
  • Uploaded new set of reference bundle files for GRCh38 and GRCh37d5 to the FTP server.
  • Updated setup.sh to install Python3 RSeQC and HTSeq.
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