Fix a few warnings #192

	name: Test

	on:
	push:
	branches: [ main ]
	pull_request:

	jobs:
	test:
	name: ${{ matrix.os }}

	defaults:
	run:
	shell: bash -l {0}

	strategy:
	fail-fast: false
	matrix:
	os:
	- ubuntu-22.04
	- macos-latest

	runs-on: ${{ matrix.os }}

	steps:
	- name: Install Ubuntu dependencies
	if: matrix.os == 'ubuntu-22.04'
	run: \|
	sudo apt-get update
	sudo apt install -y binutils-gold libbsd-dev clang-15 libclang-15-dev libclang-cpp15-dev llvm-15 llvm-15-dev libelf-dev libgmp-dev libncurses-dev libunwind-dev ninja-build sbcl zlib1g-dev libnetcdf-dev libexpat1-dev libfmt-dev libboost-all-dev

	- name: Install MacOS dependencies
	if: matrix.os == 'macos-latest'
	run: \|
	brew install boost fmt gmp llvm@15 ninja pkg-config sbcl ecl netcdf zeromq

	- name: Checkout clasp
	uses: actions/checkout@v4
	with:
	repository: clasp-developers/clasp
	ref: main

	- name: Checkout cando
	uses: actions/checkout@v4
	with:
	path: extensions/cando

	- uses: conda-incubator/setup-miniconda@v2

	- name: Install AmberTools
	run: \|
	conda install -c conda-forge ambertools

	- name: Build Clasp (koga/Ubuntu)
	if: matrix.os == 'ubuntu-22.04'
	run: \|
	./koga --extensions=cando,seqan-clasp --skip-sync=cando

	- name: Build Clasp (koga/MacOS)
	if: matrix.os == 'macos-latest'
	run: \|
	./koga --extensions=cando,seqan-clasp --skip-sync=cando --llvm-config=/usr/local/opt/llvm@15/bin/llvm-config

	- name: Build Clasp (ninja)
	run: \|
	ninja -C build

	- name: Run regression tests
	run: \|
	ninja -C build test

	- name: Run Cando regression tests
	run: \|
	ninja -C build cando-test

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