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evanfloden authored Oct 3, 2016
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Expand Up @@ -5,10 +5,10 @@ The repository contains two versions of a tradtional bash style pipeline for Mac

## Folder structure

* Folder `R/`: contains 'analysis.R' script for determining the overlapping sets
* Folder 'kallisto-linux' contains the scripts for running the native (bash), non-Nextflow verion of the pipeline on Linux
* Folder 'kallisto-mac' contains the scripts for running the native (bash), non-Nextflow verion of the pipeline on Mac OSX
* Folder 'kallisto-nf' contains the Nextflow version of the pipeline for running on any compatible platform
* Folder `R`: contains the `analysis.R` script for determining the overlapping sets
* Folder `kallisto-linux` contains the scripts for running the native (bash), non-Nextflow verion of the pipeline on Linux
* Folder `kallisto-mac` contains the scripts for running the native (bash), non-Nextflow verion of the pipeline on Mac OSX
* Folder `kallisto-nf` contains the Nextflow version of the pipeline for running on any compatible platform


## How to replicate result
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