Make sure copying happens from correct working directories (#1296) #134

	name: Build and Deploy Docsite
	on:
	push:
	tags:
	- '*'
	workflow_dispatch: # Used to make post-release docfixes
	permissions:
	contents: write

	env:
	CELLXGENE_CENSUS_USERAGENT: "CZI-test"

	jobs:
	build-and-deploy:
	concurrency: ci-${{ github.ref }}
	runs-on: sc-dev-64g-runner
	steps:
	- name: Checkout 🛎️
	uses: actions/checkout@v4
	with:
	fetch-depth: 0

	- uses: actions/setup-python@v5
	with:
	python-version: "3.11"

	- name: Install Python deps 🔧
	run: \|
	python -m pip install -U pip setuptools wheel
	pip install -r ./api/python/cellxgene_census/scripts/requirements-dev.txt
	pip install -e './api/python/cellxgene_census/[experimental,doc]'
	mkdir -p docsite
	touch docsite/.nojekyll

	- name: Install Pandoc
	run: \|
	sudo apt-get install -y pandoc

	- name: Build Sphinx website
	run: \|
	cd docs/
	make clean && make html

	- name: Copy everything to docsite directory
	run: \|
	# Python docs
	cp -r docs/_build/html/* docsite/.

	# R docs
	mkdir -p docsite/r
	cp -r api/r/cellxgene.census/docs/* docsite/r/.

	- name: Deploy 🚀
	uses: JamesIves/github-pages-deploy-action@v4
	with:
	folder: docsite # The folder the action should deploy.
	branch: gh-pages

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