Version 1.1.5

Version 1.1.5 - Minor bug fixes

1. CITS.pl: add --maxN flag
2. tag2peak.pl: bug fix when maxPH is set and p-value = nd

Minor bug fix

joinWrapper.py was modified to be compatible with python3, by Sebastien Weyn

Minor bug fix

fixed tmp dir in fasta2collapse.pl and fastq2collapse.pl during sorting

Update in hg38 annotation files

Removed random chromosomes and scaffold sequences in hg38 annotation files. They might cause the error of too many open files.

bug fix

Users analyzing drosophila data using dm6 annotation files have to upgrade to this version.

This is to fix a bug when removing tags from repetitive RNAs. Thank Anne Sapiro ([email protected]) for noticing the issue!

Add support for Drosophila Melanogaster (dm6)

v1.1.0

add support for dm6

minor bug fix in CIMS analysis

A bug fix that affects only rare scenarios

This version (v1.0.8) is a major update

This version (v1.0.8) is a major update with the following improvement:

1. improved selection of unique CLIP tags.
2. improved support for CIMS anlaysis of particular types of substitutions (e.g., T-C for PAR-CLIP).
3. a wrapper CITS.pl is included to simplify CITS anlaysis.
4. included additional annotations files.
5. included support for hg38.
6. minor bug fixes
7. improved/expanded documentation and tutorials

fix mac-specific crash

tag2peak, bed2annotation, and CIMS would crash on macOS (thanks X. Liu for pointing out)

minor bug fix

fixed an issue with default configuration file in bed2annotation.pl