Basic_Hyb_Seq_Assembly

A simple Hyb_Seq pipeline for conservatively called consensus sequence

Name		Name	Last commit message	Last commit date
Latest commit History 25 Commits
Basic_HybSeq_pipeline.ipynb		Basic_HybSeq_pipeline.ipynb
README.md		README.md
Running on Cyverse.ipynb		Running on Cyverse.ipynb
Switch_multifastas.py		Switch_multifastas.py
bam_to_fasta.sh		bam_to_fasta.sh
bam_to_fasta_strict.sh		bam_to_fasta_strict.sh
consensus_tidy.sh		consensus_tidy.sh
gather_vcf_stats.sh		gather_vcf_stats.sh
pick_BWA_parameters.sh		pick_BWA_parameters.sh
raw_to_fasta_BWA.sh		raw_to_fasta_BWA.sh
vcf_metrics.sh		vcf_metrics.sh

Provide feedback