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@clinical-genomics-uppsala

Clinical Genomics Uppsala

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  1. wgs_leukemia_tumor_only_konigskobra wgs_leukemia_tumor_only_konigskobra Public archive

    Snakemake workflow to analyse hematological malignancies in whole genome data

    Python 1

  2. validation_workflow validation_workflow Public

    workflow written in nextflow that will validate a list of files generated by hydra-genetics pipelines

    Nextflow 1

  3. Geneious_pangolin_wrapper Geneious_pangolin_wrapper Public

    Geneious wrapper plugin for Pangolin to assign pango lineages to SARS-CoV-2 genomes

    Python 1

  4. Geneious_SARS-CoV-2 Geneious_SARS-CoV-2 Public

    Geneious workflow for SARS-CoV-2 genome assembly

    1

  5. SERA SERA Public

    Perl 3

  6. arteria-provisioning arteria-provisioning Public

    Forked from arteria-project/arteria-provisioning

    Provisioning for the Arteria project

    Shell

Repositories

Showing 10 of 55 repositories
  • GMS560_config Public

    A repository for storing Uppsala specific configurations of the pipeline in production

    clinical-genomics-uppsala/GMS560_config’s past year of commit activity
    0 0 0 3 Updated Nov 19, 2024
  • fluffy_hematology_wgs Public

    Snakemake workflow to analyse hematological malignancies in whole genome data

    clinical-genomics-uppsala/fluffy_hematology_wgs’s past year of commit activity
    Python 0 GPL-3.0 1 1 3 Updated Nov 19, 2024
  • validation_workflow Public

    workflow written in nextflow that will validate a list of files generated by hydra-genetics pipelines

    clinical-genomics-uppsala/validation_workflow’s past year of commit activity
    Nextflow 1 0 0 0 Updated Nov 15, 2024
  • ductus-packs Public
    clinical-genomics-uppsala/ductus-packs’s past year of commit activity
    Python 0 1 6 (1 issue needs help) 1 Updated Nov 4, 2024
  • poirot_config Public

    A repository for storing Uppsala specific configurations of the Poirot pipeline in production

    clinical-genomics-uppsala/poirot_config’s past year of commit activity
    0 0 0 0 Updated Oct 24, 2024
  • hastings_rd_wes Public

    Whole exome sequencing pipeline for inherited diseases

    clinical-genomics-uppsala/hastings_rd_wes’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 14, 2024
  • poirot_rd_wgs Public

    Clinical Genomics Uppsala inheritance disease pipeline for WGS

    clinical-genomics-uppsala/poirot_rd_wgs’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 14, 2024
  • Geneious_metabarcoding Public

    Geneious workflow with Emu plugin to classify 16S amplicons

    clinical-genomics-uppsala/Geneious_metabarcoding’s past year of commit activity
    HTML 0 0 0 0 Updated Sep 17, 2024
  • pomfrey Public
    clinical-genomics-uppsala/pomfrey’s past year of commit activity
    Python 0 GPL-3.0 2 4 0 Updated Sep 17, 2024
  • poppy_uppsala Public

    Add-on and config for Poppy running Twist Myeloid panel

    clinical-genomics-uppsala/poppy_uppsala’s past year of commit activity
    0 GPL-3.0 0 0 1 Updated Sep 16, 2024
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