fix 286

comorment · Nov 1, 2024 · 24f80ab · 24f80ab
1 parent d9da66d
commit 24f80ab
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diff --git a/docker/scripts/R/bioconductor.R b/docker/scripts/R/bioconductor.R
@@ -22,7 +22,9 @@ packages <- c(
     'limma',
     'org.Hs.eg.db',
     'rtracklayer',
+    'SNPRelate',
     'snpStats', 
+    'SummarizedExperiment',
     'TMixClust',
     'VariantAnnotation',
     'zlibbioc')

diff --git a/docker/scripts/R/cran.R b/docker/scripts/R/cran.R
@@ -54,13 +54,15 @@ packages <- list(
     'lmerTest',
     'magrittr',
     'MatrixEQTL',
+    'matrixStats',
     'mgcv',  # has gamm function
     'miniCRAN',
     'moments',
     'MplusAutomation',
     'MVN',
     'mvtnorm',
     'optparse',
+    'parallel',
     'parameters',
     'patchwork',
     'PooledCohort',

diff --git a/docker/scripts/R/github.R b/docker/scripts/R/github.R
@@ -12,6 +12,7 @@ packages <- list(
     'GenomicSEM/GenomicSEM' = '199d16f5e45c040a25ee0c885338ebd667277135',
     'jamesliley/cfdr' = 'ec5fddbd27c746a470eb827dc249a80194b231e8',
     'jamesliley/cFDR-common-controls' = '9b923fea283e2373ee8effa2909620a1930004bd',
+    'suchestoncampbelllab/gwasurvivr' = 'adad8509ad5f1f3033548bcb4d00f6f9c60778fa',
     # gwasvcf deps:
     'MRCIEU/genetics.binaRies' = 'b0324f180476d80c43bba2ab026b72c5be426a92',
     'MRCIEU/gwasglue2' = 'c93b3a1fca7d2eae5d40bd62117091b1ad57f0fa',