CoMorMent-Containers-v1.2

CoMorMent-Containers-v1.2

This is the 2nd maintenance/feature release of the CoMorMent-Containers project.
Confer also the CHANGELOG for an overview of changes since the v1.1 release

What's Changed

• LDpred2 fixes by @deepchocolate in #94
• LDpred2.R uses external ld matrix (partial fix for #108) by @ofrei in #109
• add citation.cff and badges by @espenhgn in #113
• set appropriate number of CPU cores by @espenhgn in #115
• Remove reference to ldsc.sif (moved) by @espenhgn in #114
• QQ plots w. confidence bands by @ttfiliz in #118
• unit tests for gwas.py by @ttfiliz in #119
• --variance-standardize for columns without variation by @ttfiliz in #121
• Deepchocolate/ldpred2 updates fixes by @espenhgn in #122
• Allow custom name for IID columns by @ofrei in #123
• update config for flake8 linter by @espenhgn in #126
• Reformat gwas.py and combine_figures.py by @ofrei in #128
• removed redundant --sumstats-sep arg by @espenhgn in #129
• LD-estimation for LDpred2 using bigSNPR by @deepchocolate in #117
• change home to temporary folder in test_gwas_king by @ttfiliz in #136
• Change repo for R packages in r.sif by @espenhgn in #132
• some minor fixes to LDpred2 imputation by @espenhgn in #139
• LDpred2 imputation by @deepchocolate in #131
• removed redundant LDpred2 example by @espenhgn in #141
• Remove --file-pheno, --col-pheno and --col-pheno-from-fam args in ldpred2.R scripts by @espenhgn in #142
• LDpred2: Testing produced scores against tutorial results by @deepchocolate in #146
• Sumstats: Add column and position by @deepchocolate in #143
• LDpred2: Append score to existing output file by @deepchocolate in #150
• fixed print statements by @espenhgn in #156
• Make complementSumstats.R write file output by default by @espenhgn in #159
• clarify --geno-file-rds arg by @espenhgn in #161
• fixed bad parsing of args by @espenhgn in #164
• bumped version to reflect current state by @espenhgn in #166
• Restructured file and folder layout by @espenhgn in #167
• Add RELEASES.md file by @espenhgn in #170
• Prep release v1.2 by @espenhgn in #172

New Contributors

• @ttfiliz made their first contribution in #118

Full Changelog: v1.1...v1.2