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* Push singularity .sif files to ghcr.io with tags Fixes #12 * rename action * name * readme updates
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,99 @@ | ||
| name: container build push | ||
|
|
||
| on: | ||
| push: | ||
| branches: | ||
| - 'main' | ||
| tags: | ||
| - "v*.*.*" | ||
|
|
||
| jobs: | ||
| docker: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - | ||
| name: Docker meta | ||
| id: meta | ||
| uses: docker/metadata-action@v5 | ||
| with: | ||
| images: | | ||
| ghcr.io/${{ github.repository_owner }}/ldpred2 | ||
| tags: | | ||
| type=ref,event=branch | ||
| type=semver,pattern={{version}} | ||
| type=sha | ||
| - | ||
| name: Set up QEMU | ||
| uses: docker/setup-qemu-action@v3 | ||
| - | ||
| name: Set up Docker Buildx | ||
| uses: docker/setup-buildx-action@v3 | ||
| - | ||
| name: Login to GitHub Container Registry | ||
| if: github.event_name != 'pull_request' | ||
| uses: docker/login-action@v3 | ||
| with: | ||
| registry: ghcr.io | ||
| username: ${{ github.repository_owner }} | ||
| password: ${{ secrets.GITHUB_TOKEN }} | ||
| - | ||
| name: Build and push | ||
| uses: docker/build-push-action@v5 | ||
| with: | ||
| context: "{{defaultContext}}:docker" | ||
| push: ${{ github.event_name != 'pull_request' }} | ||
| tags: ${{ steps.meta.outputs.tags }} | ||
| file: | ||
| ./dockerfiles/ldpred2/Dockerfile | ||
| platforms: linux/amd64 | ||
|
|
||
| build-push-singularity-container: | ||
| needs: docker | ||
| runs-on: ubuntu-latest | ||
| permissions: | ||
| contents: read | ||
| packages: write | ||
| container: | ||
| image: quay.io/singularity/singularity:v4.1.0 | ||
| options: --privileged | ||
| name: Pull-push Singularity Container | ||
| steps: | ||
| - name: Check out code for the container builds | ||
| uses: actions/checkout@v4 | ||
| - name: Install dependencies | ||
| run: | | ||
| apk add --no-cache curl | ||
| VERSION="1.1.0" | ||
| curl -LO "https://github.com/oras-project/oras/releases/download/v${VERSION}/oras_${VERSION}_linux_amd64.tar.gz" | ||
| mkdir -p oras-install/ | ||
| tar -zxf oras_${VERSION}_*.tar.gz -C oras-install/ | ||
| sudo mv oras-install/oras /usr/local/bin/ | ||
| rm -rf oras_${VERSION}_*.tar.gz oras-install/ | ||
| - name: Docker meta | ||
| id: meta | ||
| uses: docker/metadata-action@v5 | ||
| with: | ||
| images: | | ||
| ghcr.io/${{ github.repository_owner }}/ldpred2 | ||
| tags: | | ||
| type=semver,pattern={{version}} | ||
| type=ref,event=branch | ||
| type=sha | ||
| - name: Pull and push Singularity container | ||
| run: | | ||
| tags="${{ steps.meta.outputs.tags }}" | ||
| tags_array= | ||
| old_ifs="$IFS" | ||
| IFS=$'\n' | ||
| for tag in $tags; do | ||
| tags_array="$tags_array $tag" | ||
| done | ||
| IFS="$old_ifs" | ||
| echo ${{ secrets.GITHUB_TOKEN }} | oras login --username ${{ github.repository_owner }} --password-stdin ghcr.io | ||
| for tag in $tags_array; do | ||
| echo "processing tag: $tag" | ||
| singularity pull ldpred2.sif docker://"$tag" | ||
| oras push "$tag" --artifact-type application/vnd.acme.rocket.config ldpred2.sif | ||
| rm ldpred2.sif | ||
| done | ||
| shell: sh |
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