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1. Cancer-miRNA-Regulatory-Network Cancer-miRNA-Regulatory-Network Public

   A database containing the predictions for the Cancer miRNA-Regulatory Network.

   Python 5 6

2. miRvestigator miRvestigator Public

   Identify miRNA that binds to a PSSM motif from 3' UTR.

   Python 3

3. cmonkey-python cmonkey-python Public

   Forked from baliga-lab/cmonkey2

   Python port of cMonkey, a machine-learning based method for clustering

   Python

4. FIRM FIRM Public

   Framework for Inference of Regulation by miRNAs (FIRM)

   Python 2

5. plaisier-lab/sygnal plaisier-lab/sygnal Public

   Forked from baliga-lab/sygnal

   SYstems Genetic Network AnaLysis (SYGNAL) pipeline

   Python

6. Sequence-Extractor Sequence-Extractor Public

   Extracts sequence for promoter and 3' UTR regions. Eventually will be developed to extract all potential cis-regulatory regions.

   Python 2 2