Update doctools directory for manage_requirements again

Bound setuptools_scm to 8 minimum
Updated rapidjson
Remove references to setup.cfg from test plugin
Use same environment variables for julia status as were used for installation

pyproject.toml

@@ -1,7 +1,7 @@
 [build-system]
 requires = [
   "scikit-build-core",
-  "setuptools_scm",
+  "setuptools_scm>=8",
   "hatch-fancy-pypi-readme",
   "numpy",
 ]

recipe/meta.yaml

@@ -51,7 +51,7 @@ requirements:
     - numpy >=1.13.0
     - python                                 # [build_platform != target_platform]
     - scikit-build-core
-    - setuptools_scm
+    - setuptools_scm >=8
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
   host:
@@ -60,7 +60,7 @@ requirements:
     - pip
     - python
     - scikit-build-core
-    - setuptools_scm
+    - setuptools_scm >=8
     - sysv_ipc  # [not win]
   run:
     - GitPython

utils/requirements/requirements.json

@@ -44,6 +44,15 @@
         "method": "conda"
       }
     },
+    {
+      "hatch-fancy-pypi-readme": {
+        "host": true,
+        "flags": {
+          "build": true,
+          "build_only": true
+        }
+      }
+    },
     {
       "matplotlib": {
         "flags": {
@@ -94,15 +103,6 @@
     "pyyaml",
     "pyzmq",
     "requests",
-    {
-      "hatch-fancy-pypi-readme": {
-        "host": true,
-        "flags": {
-          "build": true,
-          "build_only": true
-        }
-      }
-    },
     {
       "scikit-build-core": {
         "host": true,
@@ -120,7 +120,7 @@
       }
     },
     {
-      "setuptools_scm": {
+      "setuptools_scm>=8": {
         "host": true,
         "flags": {
           "build": true,

utils/requirements/requirements.yaml

@@ -67,7 +67,7 @@ general:
   - scipy:
       flags:
         method_in_setup: conda
-  - setuptools_scm:
+  - setuptools_scm>=8:
       host: True
       flags:
         build: True

yggdrasil/doctools.py

@@ -870,7 +870,8 @@ def write_package_extras_table(**kwargs):
 
     """
     from yggdrasil import tools
-    utils_dir = os.path.join(os.getcwd(), 'utils')
+    utils_dir = os.path.join(
+        os.path.dirname(os.path.dirname(os.getcwd())), 'utils')
     print(f"utils_dir = {utils_dir}")
     try:
         sys.path.insert(0, utils_dir)

yggdrasil/drivers/JuliaModelDriver.py

@@ -1,6 +1,8 @@
 from yggdrasil import platform
 from yggdrasil.drivers.InterpretedModelDriver import InterpretedModelDriver
 from yggdrasil.drivers.PythonModelDriver import PythonModelDriver
+import shutil
+import os
 
 
 class JuliaModelDriver(InterpretedModelDriver):  # pragma: Julia
@@ -126,6 +128,20 @@ def set_env_class(cls, **kwargs):
         """
         out = super(JuliaModelDriver, cls).set_env_class(**kwargs)
         out['PYTHON'] = PythonModelDriver.get_interpreter()
+        julia_exe = shutil.which('julia')
+        if ((julia_exe and out.get('CONDA_PREFIX', None)
+             and julia_exe.startswith(out['CONDA_PREFIX'])
+             and not out.get('JULIA_DEPOT_PATH', None))):
+            out['JULIA_DEPOT_PATH'] = os.pathsep.join(
+                [os.path.join(out['CONDA_PREFIX'], 'share', 'julia'), ''])
+            out['JULIA_PROJECT'] = (
+                f"@{os.path.basename(out['CONDA_PREFIX'])}")
+            out['JULIA_LOAD_PATH'] = os.pathsep.join(
+                ["@", out['JULIA_PROJECT'], "@stdlib"])
+            out['CONDA_JL_HOME'] = out['CONDA_PREFIX']
+            out['CONDA_JL_CONDA_EXE'] = out['CONDA_EXE']
+            out['JULIA_SSL_CA_ROOTS_PATH'] = os.path.join(
+                out['CONDA_PREFIX'], 'ssl', 'cacert.pem')
         return out
 
     @classmethod

yggdrasil/pytest_plugin.py

@@ -123,14 +123,14 @@ def setup_ci(args):
     args += ['-v',
              '--import-mode=importlib',
              f'--cov={package_dir}',
-             '-c', 'setup.cfg',
+             '-c', 'pyproject.toml',
              '--cov-config=.coveragerc',
              '--ignore=yggdrasil/rapidjson/']
     # f'--rootdir={package_dir}']
     # if not any(x.startswith('--with-mpi') for x in args):
     #     args += ['--reruns=2', '--reruns-delay=1', '--timeout=900']
     # Additional checks
-    if not os.path.isfile('setup.cfg'):
+    if not os.path.isfile('pyproject.toml'):
         raise RuntimeError("The CI tests must be run from the root "
                            "directory of the yggdrasil git repository.")
     src_cmd = ('python -c \"import versioneer; '
@@ -145,7 +145,7 @@ def setup_ci(args):
                             "\tBuild  version: %s\n")
                            % (src_ver, dst_ver))
     subprocess.check_call(
-        ["flake8", "yggdrasil", "--append-config", "setup.cfg"])
+        ["flake8", "yggdrasil"])  # , "--append-config", "setup.cfg"])
     if not os.path.isfile(".coveragerc"):
         raise RuntimeError(".coveragerc file dosn't exist.")
     with open(".coveragerc", "r") as fd: