Update CI to use mamba, improve dev utilities, & various bug fixes

• Update utility scripts so that requirements can be maintained in a single file with pip requirements.txt file and conda recipe generated via
  utils/manage_requirements.py
• Consolidate CLI utilities for creating environments
• Add cron job to build docker images periodically to ensure that there is always one available
• Migrate CI to use mamba instead of conda for improved performance
• Update documents to encourage use of mamba and reflect updates to development utilities
• Manage optional dependencies through pip extras and additional conda builds
• Disable flaky tests by default on CI so that tests that fail in teardown are re-run in the second attempt. They can be enabled via the pytes
  t plugin flag "--rerun-flaky"
• Add utility for tracking memory usage of multitasking processes
• Update remote integration tests to use render.io instance and only run on one CI job to prevent overtaxing it
• Handle failure on CI where MPI was not being installed
• Various updates to comply with updated PEP8 standards
• Add option to track memory usage to integration services manager
• Expand output of ygginfo to include python configuration variables, common executables, and environment variables as well as providing more
  detailed information when a language is marked as not configured
• Limit SBML testing to single CI job
• Use sysconfig options for compiled languages if they match selected compilation tools
• Fix bug where loading a yaml file with "model_only=True" yielded a result with default inputs and outputs