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70 Open 195 Closed
70 Open 195 Closed
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Issues list

rare events detection in impution pipeline
#1073 opened Sep 24, 2024 by rfeng2023
bug in TensorQTL for sQTL analysis
#1072 opened Sep 24, 2024 by rfeng2023
pipeline/extract_effects.ipynb file not found
#1024 opened Aug 2, 2024 by neeteshpandey
1
error in association analysis
#985 opened Apr 27, 2024 by rfeng2023
Gene annotation should also generate relevant files for --phenoIDFile
#942 opened Mar 26, 2024 by gaow
Some reference data download link nolonger work, pending investigation.
#758 opened Dec 1, 2023 by hsun3163
3
RNA_calling.ipynb rsem_call error when using BAM files from STAR with wasp filter
#696 opened Oct 5, 2023 by grennfp
1
Error message - BAM file shares no contigs with GTF - Knight eQTL rnaseq call
#571 opened Apr 20, 2023 by Chunmingl
13
* in snp is not allowed in MASH pipeline rds_to_vcf
#551 opened Mar 13, 2023 by rfeng2023
6
How to deal with NA column in MASH analysis
#550 opened Mar 13, 2023 by rfeng2023
1
Different result from available results
#546 opened Mar 10, 2023 by rfeng2023
2
Running gene_annotation.ipynb map_leafcutter_cluster_to_gene
#544 opened Mar 6, 2023 by grennfp
Bug in bulk_expression_QC.ipynb RLE candidate outlier output
#533 opened Feb 17, 2023 by grennfp
1
Bug in TensorQTL - pandas & numpy conflict
#528 opened Feb 15, 2023 by m-mews
1
Remaining problem in unisusie pipeline
#527 opened Feb 15, 2023 by SamuelSun2000
5
Different format of snp for Knight(WashU) genotype data
#525 opened Feb 14, 2023 by zq2209
@hsun3163
2
Bug in extracting sample id from script aggregate_rsem_results.py
#524 opened Feb 8, 2023 by mw201608
1
Accommodation for region_list header that are not started with #chr
#509 opened Jan 26, 2023 by hsun3163
Wishlist for susie finemapping piepline
#505 opened Jan 23, 2023 by SamuelSun2000
3 of 4 tasks
Bug fix in RNA calling pipeline
#475 opened Dec 6, 2022 by gouwh29
1
8
Annotation source for visualization of result
#474 opened Dec 5, 2022 by hsun3163
Adding a part to the pipeline to automatically generate the required objects in analysis_unit_list
#470 opened Nov 17, 2022 by floutt
@floutt @hsun3163
Adding a parameter for "check_prior" with susie_rss
#469 opened Nov 17, 2022 by floutt
2
Improvement for running per gene/traits analysis
#462 opened Oct 30, 2022 by hsun3163
1
PSI quantification for alternative splicing events via Psichomics: Execution halted
#459 opened Oct 24, 2022 by Shrishtee-kandoi
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