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v0.4.2 #68

Merged
merged 34 commits into from
Oct 22, 2024
Merged

v0.4.2 #68

merged 34 commits into from
Oct 22, 2024

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alxndrkalinin
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  • support for more distances
  • small fixes in filters
  • docs and examples

alxndrkalinin and others added 30 commits November 13, 2023 19:34
@alxndrkalinin
fix processing multiple queries in pos/neg sameby/diffby
c313435
@alxndrkalinin
merge df filter queries before applying
5d9b2b3
@alxndrkalinin
fix pval: use proportion of null above the _last_ entry of the statis…
87be587 
…tic value

closes cytomining#49
@johnarevalo
Merge pull request cytomining#48 from alxndrkalinin/multi_query
1ac78f9 
Merge multiple filter queries and apply once
@alxndrkalinin
pval: revert default to finding first accurentce of statistic value i…
be2e343 
…n the null
@alxndrkalinin
fix typo in computing p vals
900c807
@alxndrkalinin
feat: add pairwise euclidean distance
3955665
@alxndrkalinin
fix: return ids for rank lists needed for multilabel mode
45239f7
@alxndrkalinin
fix processing multiple queries in pos/neg sameby/diffby
1f6e4f0
@alxndrkalinin
merge df filter queries before applying
9bbc872
@alxndrkalinin
feat: add pairwise euclidean distance
e8031fc
@alxndrkalinin
fix: return ids for rank lists needed for multilabel mode
b518234
@alxndrkalinin
Merge branch 'cytomining-main' into v0.4.0
8943e9c
@alxndrkalinin
merge v0.4.0
a0dc0e1
@alxndrkalinin
Merge branch 'cytomining:main' into v0.4.0
7d9c380
@alxndrkalinin
refactor processing multiple queries for filtering the df
d5ad0a9 
see 5d9b2b3
@alxndrkalinin
add tests for query filtering
94f004e
@alxndrkalinin
add python 3.11-12 to github actions
f64449b
@alxndrkalinin
add phenotypic activity example
51ad560
@alxndrkalinin
add phenotypic consistency to example
4e0e96f
@alxndrkalinin
refactor(example): clean up, better descroptions and variable naming
769c222
@alxndrkalinin
Merge branch 'cytomining:main' into v0.4.2
0cb843f
@alxndrkalinin
add citation, sys recs & dependencies to readme
69ca584
@alxndrkalinin
fix typos
b5c5308
@alxndrkalinin
bump version to 0.4.2
2673e55
@alxndrkalinin
allow distance fn selection; add euclidean, abs_cosine
fac5985
@alxndrkalinin
chore: raise min python version to 3.9; update author list
4a07fac
@alxndrkalinin
chore: remove python 3.8 from github actions
55a5fa4
@alxndrkalinin
add manhattan & chebyshev distances
dd6ea96
@alxndrkalinin
move matching demo to example notebook, update readme
c13e66e
@johnarevalo johnarevalo merged commit 44378ed into cytomining:main Oct 22, 2024
6 checks passed
This was linked to issues Oct 22, 2024
Allow absolute cosine similarity #55
Closed
Add notebook explaining how to compute map #22
Closed
Set linting #65
Closed
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@johnarevalo johnarevalo johnarevalo approved these changes

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Set linting Allow absolute cosine similarity Add notebook explaining how to compute map
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@alxndrkalinin @johnarevalo