v0.3.5

Compatibility release for newer Python versions which may not be compatible with backports.tempfile.

Please note: This package is deprecated and will no longer be supported. Please use at your own risk!

What's Changed

• Prep for new release 0.3.3 by @shntnu in #116
• Setting version for automatically updating documentation by @gwaybio in #118
• Add Author Tag to setup.cfg by @gwaybio in #119
• Add back author copyright by @gwaybio in #120
• Parquet_integration by @diskontinuum in #122
• Create CITATION.cff by @bethac07 in #133
• Remove backports.tempfile for Python compatibility and bump version by @d33bs in #134
• Reconcile v0.3.5 with changes in branch 0.3.4 by @d33bs in #135

Full Changelog: v0.3.4...v0.3.5

0.3.4

Fixes a critical bug that prevents SQLite creation with large numbers of files.

0.3.3: Bumping version to stay in sync with Test PyPi

Release Notes

• Identical to v0.3.1. The version was bumped to stay in sync with Test PyPi, to which we had pushed newer version to fix a bug that never was.

0.3.1: Fixed ingestion bug

Release Notes

• Fixed bug that was resulting in the creation of one file per compartment #115 (introduced in 0.3.0 after the migration to sqlalchemy and pandas.read_sql)

Remove Deprecated Packages

Release Notes

• Remove odo and networkx dependencies e1c40e9
  • Now using sqlalchemy and pandas.read_sql
• Update fixture calling in pytest b4dc573
• No longer building on apveyor 9912c20
• Replacing hashlib with zlib to create unique file labels 67cf2e3
• Adding tests for missing values in sqlite files e5841a0
• Remove Gemnasium link in README 60e8ac7
• Updating maintainers 9abeabd
• Minor documentation and code style updates

v0.2.0: Merge pull request #98 from cytomining/cells2numbers-patch-1

• updated documentation
• added support to collect/ingest data even if only image CSVs are present

0.1.0

#86 Adds the option to skip the Image_ header prefix in the image table. This is the new default behavior. Excluding or including the Image_ header prefix can be configured on the command line with --skip-image-prefix / --no-skip-image-prefix.

0.0.1

Release of 0.0.1

• Added Windows support (in addition to OS X, Linux)
• Multilevel commands under the cytominer-database namespace
• Bug fixes
• Use Python default warning levels
• Supply a default configuration file
• Improvements to package development, testing, and deployment including:
  • Enable PyPI deployment on Travis
  • Publishing universal wheels
  • CI for Python 2.7 and 3.6 on Linux and Windows
  • Automated builds on readthedocs

In compliance with PyPI, @shntnu is listed as the primary package author. Other authors and contributors are referenced in the contributors document.

0.0.1b5

Fifth beta release of 0.0.1

• Added Windows support (in addition to OS X, Linux)
• Multilevel commands under the cytominer-database namespace
• Bug fixes
• Use Python default warning levels
• Supply a default configuration file
• Improvements to package development, testing, and deployment including:
  • Enable PyPI deployment on Travis
  • Publishing universal wheels
  • CI for Python 2.7 and 3.6 on Linux and Windows
  • Automated builds on readthedocs

In compliance with PyPI, @shntnu is listed as the primary package author. Other authors and contributors are referenced in the contributors document.

0.0.1b3

Third beta release of 0.0.1

• Added Windows support (in addition to OS X, Linux)
• Multilevel commands under the cytominer-database namespace
• Bug fixes
• Improvements to package development, testing, and deployment including:
  • Enable PyPI deployment on Travis
  • Publishing universal wheels
  • CI for Python 2.7 and 3.6 on Linux and Windows
  • Automated builds on readthedocs

In compliance with PyPI, @shntnu has become the primary package author. Other authors and contributors are referenced in a contributors document.