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1. CanVar CanVar Public

   Framework based upon ExAC to provide study specific variant frequencies

   JavaScript 3

2. alleleCount-FixVAF alleleCount-FixVAF Public

   Forked from cancerit/alleleCount

   Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings). Alte…

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3. MutSpot MutSpot Public

   Forked from skandlab/MutSpot

   R

4. hg38MutSpot hg38MutSpot Public

   hg39 version of MutSpot

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5. FixVAF FixVAF Public

   Code to remove bias from Isaac aligned data by clipping all reads for variant positions by 5 bases and producing a modified vcf file.

   Python

6. containers containers Public

   Forked from BioContainers/containers

   Bioinformatics containers

   Dockerfile