No mosdepth summary #23

	# name of workflow that will be displayed on the actions page
	name: Create README.md

	# execute workflow only when these files are modified
	on:
	push:
	paths:
	- 'eg/**'
	- 'Makefile'
	- 'create_readme.sh'
	- 'learning_bam_file.Rmd'
	- '.github/workflows/create_readme.yml'

	# a list of the jobs that run as part of the workflow
	jobs:
	make_markdown:
	runs-on: ubuntu-latest

	# the type of runner to run the given job
	container: davetang/r_build:4.1.3

	# a list of the steps that will run as part of the job
	steps:
	- run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
	- run: echo "This job is now running on a ${{ runner.os }} server hosted by GitHub!"
	- run: echo "The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}."
	- name: Check out repository code
	uses: actions/checkout@v4
	- run: echo "The ${{ github.repository }} repository has been cloned to the runner."
	- run: echo "The workflow is now ready to test your code on the runner."

	- run: make
	name: make

	- name: Commit report
	run: \|
	git config --global user.name 'Dave Tang'
	git config --global user.email '[email protected]'
	git config --global --add safe.directory /__w/learning_bam_file/learning_bam_file
	git add "README.md"
	git commit -m "Build README.md"
	git push origin main

	- name: Build MkDocs site
	run: \|
	cd mkdocs && mkdocs build

	- name: Deploy MkDocs
	run: \|
	git branch gh-pages
	git pull
	cd mkdocs && mkdocs gh-deploy

	- run: echo "This job's status is ${{ job.status }}."

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