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fix: grow memory when necessary in BaseVec::set. #222

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merged 3 commits into from
Jun 7, 2024
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@ielashi ielashi commented Jun 7, 2024

Problem

BaseVec, which is the underlying data structure used by StableVec and StableMinHeap provides a set method that allows the caller to change the value of an element at a specified index.

The set method used the memory.write method, which assumed that there is always enough memory to rewrite the element. This assumption would've been fine if other methods like push always allocated the maximum amount of space for every element. Currently though, push only allocates the amount needed to store the element that's being pushed.

Solution

There are two possible solutions:

  1. Modify push to always allocate the maximum size of an element.
  2. Modify set to grow the memory as needed as it's rewriting an element.

This commit implements solution 2, which is both simpler and more performant.

## Problem

`BaseVec`, which is the underlying data structure used by `StableVec`
and `StableMinHeap` provides a `set` method that allows the caller to
change the value of an element at a specified index.

The `set` method used the `memory.write` method, which assumed that
there is always enough memory to rewrite the element. This assumption
would've been fine if other methods like `push` always allocated the
maximum amount of space for every element. Currently though, `push`
only allocates the amount needed to store the element that's being
pushed.

## Solution

There are two possible solutions:

1) Modify `push` to always allocate the maximum size of an element.
2) Modify `set` to grow the memory as needed as it's rewriting an element.

This commit implements solution #2, which was both simpler and more
performant.
@ielashi ielashi requested a review from a team as a code owner June 7, 2024 12:18
src/base_vec.rs Show resolved Hide resolved
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github-actions bot commented Jun 7, 2024

canbench 🏋 (dir: .)

No significant performance changes detected ✅

./canbench_results.yml is up to date ✅


---------------------------------------------------

Benchmark: btreemap_insert_blob_4_1024
  total:
    instructions: 601.82 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 123 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_4_1024_v2
  total:
    instructions: 685.72 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 92 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_8_1024
  total:
    instructions: 720.47 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 183 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_8_1024_v2
  total:
    instructions: 811.30 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 138 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_16_1024
  total:
    instructions: 802.98 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 215 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_16_1024_v2
  total:
    instructions: 900.36 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 161 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_32_1024
  total:
    instructions: 852.44 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 230 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_32_1024_v2
  total:
    instructions: 944.16 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 173 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_64_1024
  total:
    instructions: 1.12 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 245 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_64_1024_v2
  total:
    instructions: 1.22 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 183 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_128_1024
  total:
    instructions: 1.38 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 260 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_128_1024_v2
  total:
    instructions: 1.51 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 195 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_256_1024
  total:
    instructions: 1.91 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 292 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_256_1024_v2
  total:
    instructions: 2.10 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 219 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_512_1024
  total:
    instructions: 2.99 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 351 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_512_1024_v2
  total:
    instructions: 3.24 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 263 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_1024_4
  total:
    instructions: 4.79 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 235 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_1024_4_v2
  total:
    instructions: 5.19 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 176 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_1024_8
  total:
    instructions: 4.88 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 237 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_1024_8_v2
  total:
    instructions: 5.27 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 178 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_1024_16
  total:
    instructions: 4.89 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 241 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_1024_16_v2
  total:
    instructions: 5.28 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 181 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_1024_32
  total:
    instructions: 4.91 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 239 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_1024_32_v2
  total:
    instructions: 5.30 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 180 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_1024_64
  total:
    instructions: 4.93 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 250 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_1024_64_v2
  total:
    instructions: 5.32 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 188 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_1024_128
  total:
    instructions: 4.93 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 262 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_1024_128_v2
  total:
    instructions: 5.32 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 196 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_1024_256
  total:
    instructions: 4.94 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 292 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_1024_256_v2
  total:
    instructions: 5.33 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 219 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_1024_512
  total:
    instructions: 5.03 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 348 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_1024_512_v2
  total:
    instructions: 5.43 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 261 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_u64_u64
  total:
    instructions: 438.06 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 7 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_u64_u64_v2
  total:
    instructions: 508.14 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 6 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_u64_blob_8
  total:
    instructions: 426.45 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 7 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_u64_blob_8_v2
  total:
    instructions: 492.82 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 5 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_8_u64
  total:
    instructions: 416.17 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 6 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_blob_8_u64_v2
  total:
    instructions: 514.62 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 4 pages (no change)

---------------------------------------------------

Benchmark: btreemap_insert_10mib_values
  total:
    instructions: 99.51 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 32 pages (no change)

---------------------------------------------------

Benchmark: btreemap_iter_count_small_values
  total:
    instructions: 10.12 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_iter_count_10mib_values
  total:
    instructions: 497.38 K (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_4_1024
  total:
    instructions: 617.07 M (0.08%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_4_1024_v2
  total:
    instructions: 717.03 M (0.07%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_8_1024
  total:
    instructions: 806.04 M (0.08%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_8_1024_v2
  total:
    instructions: 921.74 M (0.07%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_16_1024
  total:
    instructions: 994.84 M (0.08%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_16_1024_v2
  total:
    instructions: 1.13 B (0.06%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_32_1024
  total:
    instructions: 1.07 B (0.10%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_32_1024_v2
  total:
    instructions: 1.20 B (0.09%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_64_1024
  total:
    instructions: 1.38 B (0.07%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_64_1024_v2
  total:
    instructions: 1.52 B (0.07%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_128_1024
  total:
    instructions: 1.69 B (0.06%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_128_1024_v2
  total:
    instructions: 1.84 B (0.06%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_256_1024
  total:
    instructions: 2.31 B (0.04%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_256_1024_v2
  total:
    instructions: 2.46 B (0.04%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_512_1024
  total:
    instructions: 3.60 B (0.02%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_512_1024_v2
  total:
    instructions: 3.75 B (0.02%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_u64_u64
  total:
    instructions: 620.19 M (-0.06%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_u64_u64_v2
  total:
    instructions: 725.36 M (-0.04%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_u64_blob_8
  total:
    instructions: 596.73 M (-0.05%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_u64_blob_8_v2
  total:
    instructions: 692.87 M (-0.04%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_8_u64
  total:
    instructions: 538.42 M (-0.06%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_remove_blob_8_u64_v2
  total:
    instructions: 672.39 M (-0.05%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_4_1024
  total:
    instructions: 242.79 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_4_1024_v2
  total:
    instructions: 324.66 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_8_1024
  total:
    instructions: 282.19 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_8_1024_v2
  total:
    instructions: 363.31 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_16_1024
  total:
    instructions: 361.11 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_16_1024_v2
  total:
    instructions: 445.04 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_32_1024
  total:
    instructions: 405.06 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_32_1024_v2
  total:
    instructions: 488.78 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_64_1024
  total:
    instructions: 649.03 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_64_1024_v2
  total:
    instructions: 732.96 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_128_1024
  total:
    instructions: 878.06 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_128_1024_v2
  total:
    instructions: 976.05 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_256_1024
  total:
    instructions: 1.38 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_256_1024_v2
  total:
    instructions: 1.48 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_512_1024
  total:
    instructions: 2.37 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_512_1024_v2
  total:
    instructions: 2.47 B (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_u64_u64
  total:
    instructions: 234.87 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_u64_u64_v2
  total:
    instructions: 298.87 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_u64_blob_8
  total:
    instructions: 232.00 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_u64_blob_8_v2
  total:
    instructions: 290.96 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_8_u64
  total:
    instructions: 252.25 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: btreemap_get_blob_8_u64_v2
  total:
    instructions: 334.30 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: vec_insert_blob_4
  total:
    instructions: 3.78 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: vec_insert_blob_8
  total:
    instructions: 3.78 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 1 pages (no change)

---------------------------------------------------

Benchmark: vec_insert_blob_16
  total:
    instructions: 3.78 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 2 pages (no change)

---------------------------------------------------

Benchmark: vec_insert_blob_32
  total:
    instructions: 3.78 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 5 pages (no change)

---------------------------------------------------

Benchmark: vec_insert_blob_64
  total:
    instructions: 3.78 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 9 pages (no change)

---------------------------------------------------

Benchmark: vec_insert_blob_128
  total:
    instructions: 3.78 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 19 pages (no change)

---------------------------------------------------

Benchmark: vec_insert_u64
  total:
    instructions: 5.85 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 1 pages (no change)

---------------------------------------------------

Benchmark: vec_get_blob_4
  total:
    instructions: 5.79 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: vec_get_blob_8
  total:
    instructions: 7.03 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: vec_get_blob_16
  total:
    instructions: 9.79 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: vec_get_blob_32
  total:
    instructions: 10.62 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: vec_get_blob_64
  total:
    instructions: 15.31 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: vec_get_blob_128
  total:
    instructions: 20.90 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: vec_get_u64
  total:
    instructions: 6.27 M (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 0 pages (no change)

---------------------------------------------------

Benchmark: memory_manager_baseline
  total:
    instructions: 1052 (no change)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 8000 pages (no change)

---------------------------------------------------

Benchmark: memory_manager_overhead
  total:
    instructions: 4.55 M (0.03%) (change within noise threshold)
    heap_increase: 0 pages (no change)
    stable_memory_increase: 8320 pages (no change)

---------------------------------------------------

Benchmark: memory_manager_grow
  total:
    instructions: 286.25 M (0.34%) (change within noise threshold)
    heap_increase: 2 pages (no change)
    stable_memory_increase: 32.00 K pages (no change)

---------------------------------------------------

src/base_vec.rs Show resolved Hide resolved
@ielashi ielashi merged commit fbec750 into main Jun 7, 2024
7 checks passed
@ielashi ielashi deleted the ielashi/fix_base_vec branch June 7, 2024 13:50
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2 participants