Update Thailand Covid Data #8996
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| name: Update Thailand Covid Data | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches-ignore: | |
| - "releases/**" | |
| schedule: # can be up to 20min late. So better to have more updates | |
| # - cron: "*/19 23 * * *" # Quick checks for briefing after 7am | |
| # - cron: "55 23 * * SUN" # after midnight is delayed | |
| - cron: "50 07 * * *" # 15:05 Dashboard | |
| # - cron: "*/15 00-02 * * *" # Quick checks for briefing after 7am (but often after 8:30am) | |
| # - cron: "45 23 * * *" # 07:15 Dashboard | |
| # - cron: "02 00 * * *" # 08:02 Dashboard | |
| # - cron: "25 00 * * *" # 08:45 Dashboard | |
| # - cron: "25 05 * * *" # 12:25 daily briefing - official tweet | |
| # - cron: "*/59 06-09 * * MON" # Quick checks for briefing after 1pm | |
| # - cron: "00 06 * * *" # 13:00 daily briefing - briefing pdf | |
| # - cron: "40 06 * * *" # 13:40 daily briefing - briefing pdf | |
| # - cron: "50 07 * * *" # 14:50 in case briefing was uploaded late - #TODO: currently even later | |
| # - cron: "20 10 * * *" # 17:20 new PUI number | |
| # - cron: "20 14 * * *" # 23:20 test data/situation report/vaccination report | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| # permissions: | |
| # statuses: write | |
| steps: | |
| - uses: actions/checkout@v2 | |
| # - name: Get Cached docs | |
| # uses: actions/checkout@v2 | |
| # with: | |
| # repository: djay/covid_thailand_inputs | |
| # path: inputs | |
| # lfs: true | |
| - uses: szenius/[email protected] | |
| with: | |
| timezoneLinux: "Asia/Bangkok" | |
| - name: Get current date | |
| id: date | |
| run: | | |
| echo "::set-output name=date::$(TZ=Asia/Bangkok date +'%Y-%m-%d')" | |
| echo "::set-output name=yesterday::$(TZ=Asia/Bangkok date --date=yesterday +'%Y-%m-%d')" | |
| echo "::set-output name=month::$(TZ=Asia/Bangkok date +'%Y-%m')" | |
| echo "::set-output name=year::$(TZ=Asia/Bangkok date +'%Y')" | |
| echo "::set-output name=hour::$(TZ=Asia/Bangkok date +'%H')" | |
| echo "::set-output name=time::$(TZ=Asia/Bangkok date +'%H:%M')" | |
| echo "::set-output name=briefingurl::http://media.thaigov.go.th/uploads/public_img/source/$(TZ=Asia/Bangkok date +'%d%m')$(($(TZ=Asia/Bangkok date +'%Y')-1957)).pdf" | |
| echo "::set-output name=briefingfile::inputs/briefings/$(TZ=Asia/Bangkok date +'%d%m')$(($(TZ=Asia/Bangkok date +'%Y')-1957)).pdf" | |
| - name: Check briefing doc available | |
| id: briefing | |
| continue-on-error: true | |
| uses: jtalk/[email protected] | |
| with: | |
| url: ${{ steps.date.outputs.briefingurl }} | |
| follow-redirect: yes | |
| - name: Check api available | |
| id: api | |
| continue-on-error: true | |
| run: | | |
| (curl -sL https://covid19.ddc.moph.go.th/api/Cases/today-cases-by-provinces | grep ${{ steps.date.outputs.date }}) | |
| - name: api available or it's a push | |
| id: goready | |
| if: ${{ (github.event_name != 'schedule' || steps.api.outcome == 'success') }} | |
| run: | | |
| echo "'${{ github.event_name }}'(github.event_name)' != 'schedule' OR" | |
| echo "${{ steps.date.outputs.hour }}(steps.date.outputs.hour) < 13 OR" | |
| echo "'${{ steps.briefing.outcome }}'(steps.briefing.outcome) == 'success' AND" | |
| - name: Get release datasets | |
| uses: dsaltares/fetch-gh-release-asset@master | |
| with: | |
| file: "datasets.tar.gz" | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Extract datasets | |
| run: | | |
| tar -xzvf datasets.tar.gz | |
| rm datasets.tar.gz | |
| - name: Api not done yet | |
| id: goapi | |
| if: ${{ steps.api.outcome == 'success' }} | |
| continue-on-error: true | |
| run: (! grep ${{ steps.date.outputs.date }} api/cases_by_province.csv ) | |
| - name: Dash not done yet | |
| id: dash | |
| # if: ${{ steps.api.outcome == 'success' && steps.goapi.outcome != 'success' }} | |
| continue-on-error: true | |
| run: (! grep ${{ steps.date.outputs.date }} api/moph_dashboard_prov.csv ) | |
| - name: Cache multiple paths | |
| id: cache | |
| if: ${{ steps.goready.outcome == 'success' || steps.dash.outcome == 'success' || steps.briefing.outcome == 'success'}} | |
| uses: pat-s/[email protected] | |
| with: | |
| path: | | |
| ~/.cache/pip | |
| ${{ env.pythonLocation }} | |
| /tmp/tika-server.jar | |
| /tmp/tika-server.jar.md5 | |
| # key is evaluated only at the start so no way we can based it on files downloaded | |
| # without checking them all first. Time is hack that will cause caching on every run | |
| # see https://github.com/actions/cache/issues/135 | |
| key: ${{ runner.os }}-${{ steps.date.outputs.date }}-${{ steps.date.outputs.time }} | |
| restore-keys: | | |
| ${{ runner.os }}-${{ steps.date.outputs.date }} | |
| ${{ runner.os }}-${{ steps.date.outputs.yesterday }} | |
| ${{ runner.os }}-${{ steps.date.outputs.month }} | |
| ${{ runner.os }}-${{ steps.date.outputs.year }} | |
| ${{ runner.os }} | |
| - name: Get release with cached docs | |
| id: docsrelease | |
| if: ${{ steps.goready.outcome == 'success' || steps.dash.outcome == 'success' || steps.briefing.outcome == 'success'}} | |
| uses: dsaltares/fetch-gh-release-asset@master | |
| with: | |
| file: "inputs.tar.gz" | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Get release with cached briefings | |
| id: briefingssrelease | |
| continue-on-error: true | |
| if: ${{ steps.goready.outcome == 'success' || steps.dash.outcome == 'success' || steps.briefing.outcome == 'success'}} | |
| uses: dsaltares/fetch-gh-release-asset@master | |
| with: | |
| file: "briefings.tar.gz" | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Get release with cached situation | |
| continue-on-error: true | |
| if: ${{ steps.goready.outcome == 'success' || steps.dash.outcome == 'success' || steps.briefing.outcome == 'success'}} | |
| uses: dsaltares/fetch-gh-release-asset@master | |
| with: | |
| file: "situation.tar.gz" | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Get release with cached vaccinations | |
| continue-on-error: true | |
| if: ${{ steps.goready.outcome == 'success' || steps.dash.outcome == 'success' || steps.briefing.outcome == 'success'}} | |
| uses: dsaltares/fetch-gh-release-asset@master | |
| with: | |
| file: "vaccinations.tar.gz" | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Get release with cached testing | |
| continue-on-error: true | |
| if: ${{ steps.goready.outcome == 'success' || steps.dash.outcome == 'success' || steps.briefing.outcome == 'success'}} | |
| uses: dsaltares/fetch-gh-release-asset@master | |
| with: | |
| file: "testing.tar.gz" | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Extract cached docs # TODO; should be before or after proper cache? or conditional on cache being empty? | |
| if: ${{ steps.docsrelease.outcome == 'success' }} | |
| run: | | |
| tar -xzvf inputs.tar.gz | |
| tar -xzvf briefings.tar.gz || true | |
| tar -xzvf situation.tar.gz || true | |
| tar -xzvf vaccinations.tar.gz || true | |
| tar -xzvf testing.tar.gz || true | |
| rm inputs.tar.gz briefings.tar.gz situation.tar.gz vaccinations.tar.gz testing.tar.gz || true | |
| - name: du | |
| if: ${{ steps.docsrelease.outcome == 'success' }} | |
| run: | | |
| du -ha * | sort -h | |
| - name: go if briefing ready | |
| id: gofull | |
| if: ${{ github.event_name != 'schedule' || (steps.briefing.outcome == 'success' && hashFiles(steps.date.outputs.briefingfile) == '') }} | |
| run: | | |
| echo "'${{ github.event_name }}'(github.event_name)' != 'schedule' OR" | |
| echo "${{ steps.date.outputs.hour }}(steps.date.outputs.hour) < 13 OR" | |
| echo "('${{ steps.briefing.outcome }}'(steps.briefing.outcome) == 'success' AND" | |
| echo " '${{ hashFiles(steps.date.outputs.briefingfile) }}'(hashFiles(${{ steps.date.outputs.briefingfile }}) == '')" | |
| - name: Apt update | |
| if: ${{ steps.gofull.outcome == 'success' || steps.goapi.outcome == 'success' || steps.dash.outcome == 'success' }} | |
| id: dep_apt | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y openvpn unzip ghostscript python3-tk | |
| # sudo apt-get update -y --ignore-missing || true | |
| # uses: awalsh128/cache-apt-pkgs-action@latest | |
| # with: | |
| # packages: openvpn unzip ghostscript python3-tk | |
| # version: 1.7 | |
| # execute_install_scripts: true | |
| - name: Set up Python | |
| id: goscrape | |
| if: ${{ steps.gofull.outcome == 'success' || steps.goapi.outcome == 'success' || steps.dash.outcome == 'success' }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9.15 | |
| cache: 'pip' | |
| - uses: actions/setup-java@v1 | |
| if: ${{ steps.goscrape.outcome == 'success' }} | |
| with: | |
| java-version: 15 | |
| - name: Install dependencies | |
| if: ${{ steps.goscrape.outcome == 'success' }} | |
| id: dep | |
| env: | |
| TIKA_VERSION: 2.5.0 | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| pip install wheel | |
| pip install -r requirements.txt | |
| python -c 'from ctypes.util import find_library; print(find_library("gs"))' | |
| # Prep tika so gets a new version outside of VPN | |
| tika-python config mime-types || true | |
| # - name: Setup VPN | |
| # id: setup-vpn | |
| # run: | | |
| # sudo wget https://my.surfshark.com/vpn/api/v1/server/configurations | |
| # sudo unzip configurations | |
| # (echo -e "${{ secrets.OVPN_USERNAME }}\n${{ secrets.OVPN_PASSWORD }}") > userpass.txt | |
| # sudo openvpn --config th-bkk.prod.surfshark.com_tcp.ovpn --daemon --auth-user-pass userpass.txt | |
| # rm userpass.txt | |
| # # Wait for OpenVPN to connect | |
| # sleep 5 | |
| # tail -30 /var/log/syslog | |
| # while ! sudo pgrep openvpn > /dev/null; do | |
| # sleep 1 | |
| # done | |
| # while ! sudo grep -q "Initialization Sequence Completed" /var/log/syslog; do | |
| # sleep 1 | |
| # done | |
| # # Do something after OpenVPN connects | |
| # echo "OpenVPN connected" | |
| - name: is dash ready | |
| id: godash | |
| if: ${{ steps.dep.outcome == 'success' && steps.dep.dash != 'success' && github.event_name == 'schedule'}} | |
| continue-on-error: true | |
| # run: python -c "import covid_data_dash; covid_data_dash.check_dash_ready()" | |
| run: true | |
| - name: Scrape Covid Data API | |
| id: updateapi | |
| if: ${{ steps.gofull.outcome != 'success' && steps.godash.outcome != 'success' && steps.goapi.outcome == 'success' }} | |
| run: | | |
| # sudo docker run -t -p 8118:8118 -p 9050:9050 -l "TH" -d dperson/torproxy | |
| python covid_data_api.py | |
| env: | |
| # TIKA_VERSION: 1.24 # Prevent delays in upgrades | |
| DRIVE_API_KEY: ${{ secrets.DRIVE_API_KEY }} | |
| - name: Scrape Covid Data | |
| id: update | |
| if: ${{ steps.gofull.outcome == 'success' || steps.godash.outcome == 'success' || github.event_name != 'schedule' }} | |
| run: | | |
| python covid_plot.py | |
| env: | |
| # TIKA_VERSION: 1.24 # Prevent delays in upgrades | |
| DRIVE_API_KEY: ${{ secrets.DRIVE_API_KEY }} | |
| - name: Run tests # Do after because we don't download new files to make quicker | |
| if: ${{ github.event_name != 'schedule'}} | |
| run: | | |
| # sudo docker run -t -p 8118:8118 -p 9050:9050 -l "TH" -d dperson/torproxy | |
| pytest | |
| env: | |
| # TIKA_VERSION: 1.24 # Prevent delays in upgrades | |
| DRIVE_API_KEY: ${{ secrets.DRIVE_API_KEY }} | |
| - name: outputfiles.txt | |
| continue-on-error: true | |
| run: | |
| du inputs | tee outputfiles.txt | |
| # - name: Stop VPN | |
| # id: stop-vpn | |
| # run: | | |
| # sudo pkill -f "openvpn" | |
| - id: can-deploy | |
| env: | |
| MY_KEY: ${{ secrets.NETLIFY_AUTH_TOKEN }} | |
| if: "${{ env.MY_KEY != '' }}" | |
| run: echo "::set-output name=key::true" | |
| # - name: Push cached docs to repo | |
| # run: | | |
| # cd inputs | |
| # git config user.name github-actions | |
| # git config user.email [email protected] | |
| # git add . | |
| # git commit -m "generated" | |
| # git push | |
| - uses: ruby/setup-ruby@v1 | |
| id: gonetlify | |
| if: ${{ (steps.update.outcome == 'success' || steps.updateapi.outcome == 'success') && steps.can-deploy.outputs.key == 'true' }} | |
| with: | |
| ruby-version: 2.7.2 # Not needed with a .ruby-version file | |
| bundler-cache: true # runs 'bundle install' and caches installed gems automatically | |
| - name: Make links relative so PRs still work | |
| if: ${{ steps.gonetlify.outcome == 'success' && github.ref != 'refs/heads/main'}} | |
| run: | | |
| sed -i 's#https://practical-ritchie-cca141\.netlify\.app#.#g' README.md | |
| - name: Jekyll Build | |
| if: ${{ steps.gonetlify.outcome == 'success' }} | |
| run: | | |
| bundle config set --local path vendor/bundle | |
| bundler install --jobs 4 --retry 3 | |
| sed -i 's#!\[.*\](\(.*_.[^\)]*\)\.png)#<a href="\1.svg" target="_black"><object width="100%" type="image/svg+xml" data="\1.svg"><img src="\1.png" /></object></a>#g' README.md | |
| sed -Ei 's#\[(.*)\](\(.*_.[^\)]*\)\.png)#<a href="\2.svg" target="_black">\1</a>#g' README.md | |
| cp *.md docs | |
| cp -R assets docs/assets | |
| cp _config.yml docs/_config.yml | |
| bundle exec jekyll build --destination=./_site | |
| - name: Inject slug/short variables | |
| uses: rlespinasse/[email protected] | |
| - name: Deploy gh-pages | |
| if: ${{ steps.gonetlify.outcome == 'success' && github.ref == 'refs/heads/main' }} | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./docs | |
| publish_branch: gh-pages | |
| enable_jekyll: true | |
| force_orphan: true | |
| - name: path urls for netlify | |
| if: ${{ steps.gonetlify.outcome == 'success' }} | |
| run: | | |
| sed -i 's/https:\/\/practical-ritchie-cca141.netlify.app//g' README.md | |
| sed -i 's/https:\/\/practical-ritchie-cca141.netlify.app//g' downloads.md | |
| - name: Deploy to Netlify | |
| if: ${{ steps.gonetlify.outcome == 'success' }} | |
| id: netlify | |
| uses: nwtgck/[email protected] | |
| with: | |
| publish-dir: './_site' | |
| production-branch: main | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| deploy-message: "Deploy from GitHub Actions" | |
| enable-pull-request-comment: false | |
| enable-commit-comment: true | |
| overwrites-pull-request-comment: true | |
| env: | |
| NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }} | |
| NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }} | |
| timeout-minutes: 3 | |
| # - name: Upload png to wiki | |
| # if: ${{ steps.netlify.outcome == 'success' && github.ref == 'refs/heads/main' }} | |
| # uses: kai-tub/external-repo-sync-action@v1 | |
| # with: | |
| # source-directory: "outputs" | |
| # include-patterns: "*.png" | |
| # env: | |
| # GH_ACCESS_TOKEN: ${{ secrets.GH_ACCESS_TOKEN }} | |
| # - name: Upload json to wiki | |
| # if: ${{ steps.netlify.outcome == 'success' && github.ref == 'refs/heads/main' }} | |
| # uses: kai-tub/external-repo-sync-action@v1 | |
| # with: | |
| # source-directory: "api" | |
| # include-patterns: "*" | |
| # env: | |
| # GH_ACCESS_TOKEN: ${{ secrets.GH_ACCESS_TOKEN }} | |
| - name: Run tests # Do after because we don't download new files to make quicker | |
| if: ${{ github.event_name != 'schedule'}} | |
| run: | | |
| # sudo docker run -t -p 8118:8118 -p 9050:9050 -l "TH" -d dperson/torproxy | |
| pytest | |
| env: | |
| TIKA_VERSION: 1.24 # Prevent delays in upgrades | |
| DRIVE_API_KEY: ${{ secrets.DRIVE_API_KEY }} | |
| - name: Make cached docs bundle | |
| id: makerelease | |
| if: ${{ steps.netlify.outcome == 'success' && github.ref == 'refs/heads/main' }} | |
| run: | | |
| tar -czvf briefings.tar.gz -T <(\ls -1 inputs/briefings/*) | |
| tar -czvf situation.tar.gz -T <(\ls -1 inputs/situation_*/*) | |
| tar -czvf vaccinations.tar.gz -T <(\ls -1 inputs/vaccinations/*) | |
| tar -czvf testing.tar.gz -T <(\ls -1 inputs/testing_moph/* inputs/variants/*) | |
| tar --exclude="inputs/.git" --exclude="_site" --exclude="._*" --exclude="inputs/json/*.csv" --exclude="inputs/briefings/*" --exclude="inputs/situation_*/*" --exclude="inputs/vaccinations/*" --exclude="inputs/variants/*" --exclude="inputs/testing_moph/*" -czvf inputs.tar.gz inputs | |
| find api inputs/json -path "api/*" -o -name "*.csv" | tar -czvf datasets.tar.gz -T - | |
| - uses: "marvinpinto/action-automatic-releases@latest" | |
| if: ${{ steps.makerelease.outcome == 'success' }} | |
| with: | |
| repo_token: "${{ secrets.GITHUB_TOKEN }}" | |
| prerelease: false | |
| automatic_release_tag: ${{ steps.date.outputs.date }} | |
| title: Dataset and input files for covidthailand for ${{ steps.date.outputs.date }} | |
| files: | | |
| briefings.tar.gz | |
| situation.tar.gz | |
| vaccinations.tar.gz | |
| testing.tar.gz | |
| datasets.tar.gz | |
| inputs.tar.gz | |
| - name: Upload inputs.tar.gz to existing release | |
| if: ${{ steps.makerelease.outcome == 'success' }} | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| file: ./inputs.tar.gz | |
| asset_name: inputs.tar.gz | |
| tag: 1 | |
| overwrite: true | |
| body: "Updated docs" | |
| - name: Upload datasets.tar.gz to existing release | |
| if: ${{ steps.makerelease.outcome == 'success' }} | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| file: ./datasets.tar.gz | |
| asset_name: datasets.tar.gz | |
| tag: 1 | |
| overwrite: true | |
| body: "Updated docs" | |
| - name: Upload vaccinations.tar.gz to existing release | |
| if: ${{ steps.makerelease.outcome == 'success' }} | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| file: ./vaccinations.tar.gz | |
| asset_name: vaccinations.tar.gz | |
| tag: 1 | |
| overwrite: true | |
| body: "Updated vaccinations" | |
| - name: Upload testing.tar.gz to existing release | |
| if: ${{ steps.makerelease.outcome == 'success' }} | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| file: ./testing.tar.gz | |
| asset_name: testing.tar.gz | |
| tag: 1 | |
| overwrite: true | |
| body: "Updated testing" | |
| # - name: Upload briefings.tar.gz to existing release | |
| # if: ${{ steps.makerelease.outcome == 'success' }} | |
| # uses: svenstaro/upload-release-action@v2 | |
| # with: | |
| # repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| # file: ./briefings.tar.gz | |
| # asset_name: briefings.tar.gz | |
| # tag: 1 | |
| # overwrite: true | |
| # body: "Updated briefings" | |
| # - name: Upload situation.tar.gz to existing release | |
| # if: ${{ steps.makerelease.outcome == 'success' }} | |
| # uses: svenstaro/upload-release-action@v2 | |
| # with: | |
| # repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| # file: ./situation.tar.gz | |
| # asset_name: situation.tar.gz | |
| # tag: 1 | |
| # overwrite: true | |
| # body: "Updated situation" | |