Update testthat version so GitHub Actions hopefully works

duke-malaria-collaboratory · Nov 17, 2023 · 94e0568 · 94e0568
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commit 94e0568
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Showing 5 changed files with 11 additions and 11 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -16,7 +16,7 @@ Suggests:
     knitr (>= 1.43),
     readr (>= 2.1.4),
     rmarkdown (>= 2.24),
-    testthat (>= 3.0.0)
+    testthat (>= 3.2.0)
 Config/testthat/edition: 3
 Imports: 
     codetools (>= 0.2.19),

diff --git a/tests/testthat/_snaps/bistro.md b/tests/testthat/_snaps/bistro.md
@@ -3,7 +3,7 @@
     Code
       bistro(data.frame(bm_evid1), data.frame(hu_p1), pop_allele_freqs = pop_allele_freqs,
       kit = "ESX17", peak_thresh = 200)
-    Message <simpleMessage>
+    Message
       1/17 markers in kit but not in pop_allele_freqs: AMEL
       Formatting bloodmeal profiles
       Removing 4 peaks under the threshold of 200 RFU.
@@ -25,7 +25,7 @@
 
     Code
       bistro(bm_evid1, hu_p1, calc_allele_freqs = TRUE, kit = "ESX17", peak_thresh = 200)
-    Message <simpleMessage>
+    Message
       Formatting bloodmeal profiles
       Removing 4 peaks under the threshold of 200 RFU.
       Formatting human profiles
@@ -47,7 +47,7 @@
     Code
       bistro(bm_evid1, human_profiles, pop_allele_freqs = pop_allele_freqs, kit = "ESX17",
         peak_thresh = 200, return_lrs = TRUE)
-    Message <simpleMessage>
+    Message
       1/17 markers in kit but not in pop_allele_freqs: AMEL
       Formatting bloodmeal profiles
       Removing 4 peaks under the threshold of 200 RFU.

diff --git a/tests/testthat/_snaps/calc_log10_lrs.md b/tests/testthat/_snaps/calc_log10_lrs.md
@@ -62,7 +62,7 @@
     Code
       calc_log10_lrs(bm_profs, hu_profs, pop_allele_freqs = pop_allele_freqs, kit = "ESX17",
         peak_thresh = 200)
-    Message <simpleMessage>
+    Message
       # bloodmeal ids: 2
       # human ids: 1
       Bloodmeal id 1/2

diff --git a/tests/testthat/_snaps/match_similarity.md b/tests/testthat/_snaps/match_similarity.md
@@ -2,7 +2,7 @@
 
     Code
       match_similarity(bm_profs, hu_profs)
-    Message <simpleMessage>
+    Message
       Calculating human-human similarities
       Maximum similarity between people: 0.5
       Calculating bloodmeal-human similarities
@@ -19,7 +19,7 @@
 
     Code
       match_similarity(bloodmeal_profiles, human_profiles)
-    Message <simpleMessage>
+    Message
       Calculating human-human similarities
       Maximum similarity between people: 0.117647058823529
       Calculating bloodmeal-human similarities
@@ -37,7 +37,7 @@
 
     Code
       match_similarity(bloodmeal_profiles, human_profiles, return_similarities = TRUE)
-    Message <simpleMessage>
+    Message
       Calculating human-human similarities
       Maximum similarity between people: 0.117647058823529
       Calculating bloodmeal-human similarities
@@ -75,7 +75,7 @@
 
     Code
       match_similarity(bloodmeal_profiles, human_profiles, peak_thresh = 200)
-    Message <simpleMessage>
+    Message
       Removing 6 peaks under the threshold of 200 RFU.
       For 1/4 bloodmeal ids, all peaks are below the threshold
       Calculating human-human similarities

diff --git a/tests/testthat/_snaps/preprocess_data.md b/tests/testthat/_snaps/preprocess_data.md
@@ -3,7 +3,7 @@
     Code
       prep_bloodmeal_profiles(bloodmeal_profiles, bloodmeal_ids = "evid1",
         peak_thresh = 200)
-    Message <simpleMessage>
+    Message
       Removing 4 peaks under the threshold of 200 RFU.
     Output
       # A tibble: 48 x 4
@@ -66,7 +66,7 @@
     Code
       rm_twins(dplyr::bind_rows(human_profiles, dplyr::mutate(dplyr::filter(
         human_profiles, SampleName == "P1"), SampleName = "Pdup")))
-    Message <simpleMessage>
+    Message
       Identified 2 people whose profiles appear more than once (likely identical twins). These are being removed.
     Output
       # A tibble: 63 x 3