Releases: dyndna/pcawg14_htseq
Releases · dyndna/pcawg14_htseq
Stable Release: Batch run pcawg14_htseq docker on VMs
./scripts/htseq_docker_run.sh
v0.9.4p4
- Depends on docker image: dyndna/pcawg14_htseq:0.9.2
- Ability to download from cghub, samtools sort followed by htseq-count using user specified gtf.
- Ability to run multiple instances using bash script
- Batch script takes three arguments to allow user-specified range of samples, e.g., Run samples from 50th to 100th from stored CGHub summary tsv file.
- User can also run single sample analysis by giving three arguments: analysis id, name of bam file and checksum of bam file.