new module: Pymygene (#5271) #7
famosabtest.yml
on: push
Matrix: nf-test
Matrix: nf-core-lint
Matrix: pytest
confirm-pass
0s
Annotations
65 errors and 3 warnings
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pytest (ashlar, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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pytest (ashlar, docker)
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pytest (ashlar, singularity)
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nf-core-lint (islandpath)
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nf-core-lint (bcftools/stats)
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nf-core-lint (bamclipper)
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nf-core-lint (ashlar)
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nf-core-lint (isoseq3/tag)
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nf-core-lint (deepvariant)
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nf-core-lint (celesta)
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nf-core-lint (mygene)
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nf-core-lint (cnvkit/batch)
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nf-core-lint (circularmapper/circulargenerator)
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nf-core-lint (openms/idmerger)
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nf-core-lint (leviosam2/lift)
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nf-core-lint (openms/peptideindexer)
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nf-core-lint (popscle/dscpileup)
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nf-core-lint (strelka/germline)
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nf-test (bcftools/stats, conda)
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nf-core-lint (plink/gwas)
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nf-test (bcftools/stats, singularity)
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nf-core-lint (strelka/somatic)
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nf-test (bcftools/stats, docker)
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nf-test (islandpath, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (isoseq3/tag, docker)
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nf-test (islandpath, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (isoseq3/tag, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (leviosam2/lift, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (mygene, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (leviosam2/lift, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (leviosam2/lift, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (mygene, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (mygene, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (popscle/dscpileup, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (plink/gwas, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (popscle/dscpileup, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (bamclipper, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (bamclipper, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (bamclipper, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (cnvkit/batch, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (circularmapper/circulargenerator, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (cnvkit/batch, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (popscle/dscpileup, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (cnvkit/batch, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (isoseq3/tag, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (deepvariant, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (deepvariant, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (openms/idmerger, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (openms/idmerger, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (openms/idmerger, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (openms/peptideindexer, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (strelka/germline, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (openms/peptideindexer, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (plink/gwas, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (celesta, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (plink/gwas, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (strelka/somatic, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (strelka/somatic, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (openms/peptideindexer, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (circularmapper/circulargenerator, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (strelka/germline, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (strelka/somatic, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (circularmapper/circulargenerator, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (celesta, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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nf-test (strelka/germline, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
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pytest-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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